View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17020_high_30 (Length: 307)

Name: NF17020_high_30
Description: NF17020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17020_high_30
NF17020_high_30
[»] chr5 (9 HSPs)
chr5 (29-307)||(38816463-38816741)
chr5 (215-307)||(22423764-22423858)
chr5 (1-37)||(37704455-37704491)
chr5 (213-262)||(8420075-8420124)
chr5 (42-83)||(38821887-38821928)
chr5 (215-267)||(9929668-9929720)
chr5 (213-243)||(24906250-24906280)
chr5 (154-192)||(35665559-35665597)
chr5 (1-37)||(37698637-37698673)
[»] chr1 (1 HSPs)
chr1 (215-268)||(48547938-48547991)
[»] scaffold0168 (3 HSPs)
scaffold0168 (215-276)||(21217-21278)
scaffold0168 (215-276)||(21088-21149)
scaffold0168 (215-276)||(21346-21407)
[»] chr6 (5 HSPs)
chr6 (215-262)||(426478-426525)
chr6 (215-262)||(5732474-5732521)
chr6 (215-280)||(8805524-8805592)
chr6 (213-243)||(34073276-34073306)
chr6 (215-256)||(2117134-2117175)
[»] chr2 (6 HSPs)
chr2 (215-262)||(19536361-19536408)
chr2 (215-262)||(19574031-19574078)
chr2 (216-262)||(18255945-18255991)
chr2 (216-262)||(34691770-34691816)
chr2 (216-262)||(34714182-34714228)
chr2 (215-251)||(42511322-42511358)
[»] chr3 (4 HSPs)
chr3 (213-251)||(4466538-4466576)
chr3 (213-243)||(5440965-5440995)
chr3 (213-251)||(13807237-13807275)
chr3 (215-251)||(27505334-27505370)
[»] chr7 (3 HSPs)
chr7 (214-243)||(17852091-17852120)
chr7 (215-280)||(11700842-11700909)
chr7 (215-243)||(15680900-15680928)
[»] scaffold0450 (1 HSPs)
scaffold0450 (215-243)||(8564-8592)
[»] scaffold0027 (1 HSPs)
scaffold0027 (213-261)||(46731-46778)
[»] chr4 (2 HSPs)
chr4 (215-259)||(18844423-18844467)
chr4 (215-251)||(28470448-28470484)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 38816463 - 38816741
Alignment:
Q  29 gcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816463 gcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaa 38816562  T
Q  129 tatctagcaccgagacttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaagcacgga 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38816563 tatctagcaccgagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaatcacgga 38816662  T
Q  229 cactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38816663 cactcctcgaattagccatgtccgacaccgacaccacaccgacacataattatactgaaatatagcgattttctcaaat 38816741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 307
Target Start/End: Original strand, 22423764 - 22423858
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtcc-gacaccgacaccacaccgac--acataattataatgaaatatagcgattttctcaaat 307  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||||||| ||||||||  | ||||||||| |||| ||| | |||||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtccagacaccgacacgacaccgacatatataattatattgaattat-gtgattttctcaaat 22423858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37704455 - 37704491
Alignment:
Q  1 ccaaaaaggttgacttattagattgtttgcaaattga 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  37704455 ccaaaaaggttgacttattagattgtttgcaaattga 37704491  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 8420124 - 8420075
Alignment:
Q  213 aactatgaagcacggacactcctcgaattagccatgtccgacaccgacac 262  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  8420124 aactatgaagcacggatactcctcgaattaggcgcgtccgacaccgacac 8420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 38821887 - 38821928
Alignment:
Q  42 tccacagcaagatcactcaaatcttcacctgaacacacaaca 83  Q
    |||||||||||||| |||||||||||||||| ||||||||||    
T  38821887 tccacagcaagatcgctcaaatcttcacctggacacacaaca 38821928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 9929720 - 9929668
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacac 267  Q
    ||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||    
T  9929720 ctatgaagcacagacactcctcgaattagtcgtgtccgataccgacacgacac 9929668  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 24906250 - 24906280
Alignment:
Q  213 aactatgaagcacggacactcctcgaattag 243  Q
    |||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaattag 24906280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
Q  154 aaggtgtgtccagtgtccaacagatgtcagtctccaaca 192  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  35665559 aaggtgtgtccagtgtccaacacatgtcagtttccaaca 35665597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37698637 - 37698673
Alignment:
Q  1 ccaaaaaggttgacttattagattgtttgcaaattga 37  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  37698637 ccaaaaagtttgacttattagattgtttacaaattga 37698673  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 48547938 - 48547991
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacacc 268  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||| |||||    
T  48547938 ctatgaagcacggacactcctcgaattaggcgtatccgacaccgacacgacacc 48547991  T

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Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 21278 - 21217
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 276  Q
    |||||||||||||| |||||||| ||||| | |||| ||||||||||| | |||||||||||    
T  21278 ctatgaagcacggatactcctcggattaggcgtgtctgacaccgacacgataccgacacata 21217  T

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Target: scaffold0168; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 21149 - 21088
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 276  Q
    |||||||||||||| ||| |||| ||||| | |||| ||||||||||| | |||||||||||    
T  21149 ctatgaagcacggatacttctcggattaggcgtgtctgacaccgacacgataccgacacata 21088  T

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Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 21407 - 21346
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 276  Q
    ||||||||||| |||||| |||| ||||| | |||| ||||||||||| | |||||||||||    
T  21407 ctatgaagcacagacacttctcggattaggcgtgtctgacaccgacacgataccgacacata 21346  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 426478 - 426525
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 262  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtccgacaccgacac 426525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 5732474 - 5732521
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 262  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  5732474 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 5732521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 8805524 - 8805592
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgac---accgacaccacaccgacacataatta 280  Q
    ||||||||||||||||||||||| ||||| ||||||| ||    | ||||| |||||||||||||||||    
T  8805524 ctatgaagcacggacactcctcggattaggcatgtcccacgtgtctgacactacaccgacacataatta 8805592  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 34073276 - 34073306
Alignment:
Q  213 aactatgaagcacggacactcctcgaattag 243  Q
    |||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaattag 34073306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 2117175 - 2117134
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgacac 256  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  2117175 ctatgaagcacggacactcctccgattaggcatgtccgacac 2117134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 19536361 - 19536408
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 262  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  19536361 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 19536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 19574078 - 19574031
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 262  Q
    |||||||||| ||||||||||||||||||   ||||||||||||||||    
T  19574078 ctatgaagcatggacactcctcgaattaggtgtgtccgacaccgacac 19574031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 18255945 - 18255991
Alignment:
Q  216 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 262  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||||    
T  18255945 tatgaagcacggacactccttggattaggcgtgtccgacaccgacac 18255991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 34691770 - 34691816
Alignment:
Q  216 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 262  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34691770 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34691816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 34714182 - 34714228
Alignment:
Q  216 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 262  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34714182 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 42511322 - 42511358
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtcc 251  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtcc 42511358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 4466538 - 4466576
Alignment:
Q  213 aactatgaagcacggacactcctcgaattagccatgtcc 251  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  4466538 aactatgaagcacggacactcctcgaataagccgtgtcc 4466576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 5440965 - 5440995
Alignment:
Q  213 aactatgaagcacggacactcctcgaattag 243  Q
    |||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaattag 5440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 13807275 - 13807237
Alignment:
Q  213 aactatgaagcacggacactcctcgaattagccatgtcc 251  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  13807275 aactatgaaacacggacactcctcgaattaggcatgtcc 13807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 27505370 - 27505334
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtcc 251  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcc 27505334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 17852120 - 17852091
Alignment:
Q  214 actatgaagcacggacactcctcgaattag 243  Q
    ||||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaattag 17852091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 11700909 - 11700842
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgt--ccgacaccgacaccacaccgacacataatta 280  Q
    ||||||| || |||||||||||| ||||||| |||  |||||||||| || |||| ||||||||||||    
T  11700909 ctatgaatcagggacactcctcggattagccgtgtgtccgacaccgagacaacacagacacataatta 11700842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 15680928 - 15680900
Alignment:
Q  215 ctatgaagcacggacactcctcgaattag 243  Q
    |||||||||||||||||||||||||||||    
T  15680928 ctatgaagcacggacactcctcgaattag 15680900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 8564 - 8592
Alignment:
Q  215 ctatgaagcacggacactcctcgaattag 243  Q
    |||||||||||||||||||||||||||||    
T  8564 ctatgaagcacggacactcctcgaattag 8592  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 46778 - 46731
Alignment:
Q  213 aactatgaagcacggacactcctcgaattagccatgtccgacaccgaca 261  Q
    ||||||||||||||||||||||||| ||||| | ||| |||||||||||    
T  46778 aactatgaagcacggacactcctcggattaggcgtgt-cgacaccgaca 46731  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 18844423 - 18844467
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtccgacaccga 259  Q
    |||||||||||||||||| |||| ||||| | |||||||||||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgtccgacaccga 18844467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 28470484 - 28470448
Alignment:
Q  215 ctatgaagcacggacactcctcgaattagccatgtcc 251  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  28470484 ctatgaagcacggacactcctcggattaggcatgtcc 28470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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