View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17020_high_4 (Length: 410)
Name: NF17020_high_4
Description: NF17020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17020_high_4 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 350
Target Start/End: Complemental strand, 23348741 - 23348413
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348741 |
catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
23348642 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta |
221 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23348641 |
ctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta |
23348542 |
T |
|
| Q |
222 |
acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23348541 |
acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat |
23348442 |
T |
|
| Q |
322 |
aaattgattgatactttaaaatcatgtgt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23348441 |
aaattgattgatactttaaaatcatgtgt |
23348413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 22 - 386
Target Start/End: Original strand, 12742048 - 12742414
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12742048 |
catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgccgccgcagctctctcctgtcgtcgcccttcaccaatgct |
12742147 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta |
221 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12742148 |
ctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagcaaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta |
12742247 |
T |
|
| Q |
222 |
acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12742248 |
acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat |
12742347 |
T |
|
| Q |
322 |
aaattgattgatactttaaaatc--atgtgtannnnnnnnncaaacacaccaatatgtccattgatg |
386 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
12742348 |
aaattgattgatactttaaaatcatatgtgtatttttttttcaaacacaccaatatgtccattgatg |
12742414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 22 - 346
Target Start/End: Complemental strand, 18355074 - 18354744
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18355074 |
catcttccatctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
18354975 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatat------cctaaatcgttgtt |
215 |
Q |
| |
|
|||||||| ||| ||||||||| ||||| ||||||||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18354974 |
ctcgattccgacatcaccttcgctgttgttgtctgcggcgtcgtatcagtcaggtgtgttgaagatgctactatatatatatatatcctaaatcgttgtt |
18354875 |
T |
|
| Q |
216 |
cttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgct |
315 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18354874 |
cctgtagcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgct |
18354775 |
T |
|
| Q |
316 |
attaataaattgattgatactttaaaatcat |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18354774 |
cttaataaattgattgatactttaaaatcat |
18354744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 183 - 386
Target Start/End: Complemental strand, 10328627 - 10328422
Alignment:
| Q |
183 |
aagatgctactatatatat--cctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatg |
280 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10328627 |
aagatgctactatatatatatcctaaatcgttgttcatgtatcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatg |
10328528 |
T |
|
| Q |
281 |
atatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgtannnnnnnnncaaacacaccaatatgtcca |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10328527 |
atatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgtatttttttttcaaacacaccaatatgtcca |
10328428 |
T |
|
| Q |
381 |
ttgatg |
386 |
Q |
| |
|
|||||| |
|
|
| T |
10328427 |
ttgatg |
10328422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 10328658 - 10328626
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaa |
54 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
10328658 |
catcttccacctcactctcagacattcaaacaa |
10328626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 22 - 386
Target Start/End: Original strand, 1014 - 1378
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1014 |
catcttccacctcactctcagacatttaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
1113 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta |
221 |
Q |
| |
|
|||||||| ||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1114 |
ctcgattccgacatcactttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta |
1213 |
T |
|
| Q |
222 |
acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1214 |
acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat |
1313 |
T |
|
| Q |
322 |
aaattgattgatactttaaaatcatgtgtannnnnnnnncaaacacaccaatatgtccattgatg |
386 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1314 |
aaattgattgatattttaaaatcatgtgtatttttttttcaaacacaccaatatgtccattgatg |
1378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 22 - 346
Target Start/End: Complemental strand, 43071143 - 43070819
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43071143 |
catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
43071044 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta |
221 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43071043 |
ctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta |
43070944 |
T |
|
| Q |
222 |
acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43070943 |
acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaat |
43070844 |
T |
|
| Q |
322 |
aaattgattgatactttaaaatcat |
346 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
43070843 |
aaattgattgatactttaaaatcat |
43070819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 1262449 - 1262601
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1262449 |
catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctttctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
1262548 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag |
174 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
1262549 |
ctcgattccgacatcaccttcgccgttgtcgtatgcggcatcgtatcagccag |
1262601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 48849543 - 48849391
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48849543 |
catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctttctccgtcgccgcagctctctcctttcgtcgcccttcaccaatgct |
48849444 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag |
174 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
48849443 |
ctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccag |
48849391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 22 - 386
Target Start/End: Complemental strand, 53973047 - 53972682
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53973047 |
catcttccacctcactctcagacatttaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
53972948 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta |
221 |
Q |
| |
|
|||||||| ||| |||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53972947 |
ctcgattccgacatcactttcgtcgttgtcgtctgcggcatcgtatcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta |
53972848 |
T |
|
| Q |
222 |
acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53972847 |
acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat |
53972748 |
T |
|
| Q |
322 |
aaattgattgatactttaaaatcatgtgta-nnnnnnnnncaaacacaccaatatgtccattgatg |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53972747 |
aaattgattgatactttaaaatcatgtgtattttttttttcaaacacaccaatatgtccattgatg |
53972682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 22 - 350
Target Start/End: Complemental strand, 19881872 - 19881544
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
19881872 |
catcttccacctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgtcaccgcagctctctcctgtcctcacccttcaccaatgct |
19881773 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta |
221 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19881772 |
ctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta |
19881673 |
T |
|
| Q |
222 |
acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19881672 |
acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat |
19881573 |
T |
|
| Q |
322 |
aaattgattgatactttaaaatcatgtgt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19881572 |
aaattgattgatactttaaaatcatgtgt |
19881544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 193 - 351
Target Start/End: Original strand, 37982939 - 37983097
Alignment:
| Q |
193 |
tatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatag |
292 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37982939 |
tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatag |
37983038 |
T |
|
| Q |
293 |
attttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta |
351 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37983039 |
attttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta |
37983097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 37982712 - 37982891
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37982712 |
catcttccacctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctatcgtcgcccttcaccaatgct |
37982811 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatat |
201 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
37982812 |
ctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctaatatatatat |
37982891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 31685485 - 31685575
Alignment:
| Q |
84 |
gccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
31685485 |
gccgcagctctctcctgtcgtcgcccttcaccaatgatatcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccag |
31685575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 31685438 - 31685489
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgc |
73 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
31685438 |
catcttccacctcactctcagacattcaaacaaaattatatgccgttgccgc |
31685489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 17682201 - 17682246
Alignment:
| Q |
107 |
cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg |
152 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| | |||||||| |
|
|
| T |
17682201 |
cccttcaccaatgctctcgattccgacatcacctttgccgttgtcg |
17682246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 19766443 - 19766488
Alignment:
| Q |
107 |
cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg |
152 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||| |||||||| |
|
|
| T |
19766443 |
cccttcaccaatgctctagattccgacatcaccttcgccgttgtcg |
19766488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 22 - 346
Target Start/End: Original strand, 9044162 - 9044486
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9044162 |
catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
9044261 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta |
221 |
Q |
| |
|
||||||| ||| ||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9044262 |
ctcgatttcgacatcaccttcgtcgttgtcgtctgcagcatcgtatcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta |
9044361 |
T |
|
| Q |
222 |
acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9044362 |
acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat |
9044461 |
T |
|
| Q |
322 |
aaattgattgatactttaaaatcat |
346 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
9044462 |
aaattgattgatactttaaaatcat |
9044486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 386
Target Start/End: Complemental strand, 7473250 - 7472880
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7473250 |
catcttccacctcactctcagacattcaaacaaaattctctgccgttgtcgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
7473151 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatat----atatcctaaatcgttgttct |
217 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7473150 |
ctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatatatcctaaatcgttgttcc |
7473051 |
T |
|
| Q |
218 |
tgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7473050 |
tgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgt |
7472951 |
T |
|
| Q |
318 |
taataaattgattgatactttaaaatc--atgtgtannnnnnnnncaaacacaccaatatgtccattgatg |
386 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
7472950 |
taataaattgattgatactttaaaatcatatgtgtatttttttttcaaacacaccaatatgtccattgatg |
7472880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 22 - 346
Target Start/End: Complemental strand, 30442307 - 30441983
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30442307 |
catcttccacctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgttgccgcagctctctcctgtcgtcgcccttcaccaatgct |
30442208 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta |
221 |
Q |
| |
|
|||||||| ||| ||||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30442207 |
ctcgattccgacatcaccttggccgttgtcgtctgcggcatcgtatcagccatatgtgttgaagatgctactatatatatcctaaatcgttgttcctgta |
30442108 |
T |
|
| Q |
222 |
acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
30442107 |
acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaat |
30442008 |
T |
|
| Q |
322 |
aaattgattgatactttaaaatcat |
346 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30442007 |
aaattgattgatactttaaaatcat |
30441983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 40163917 - 40163996
Alignment:
| Q |
230 |
ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattat |
312 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| | |||||| ||||||||| ||||||||||| || ||||||||| |
|
|
| T |
40163917 |
ctaactttgttattccattatatatttagtttgtttggatgtgaat---tgatatttacatagattttacaattatgtattat |
40163996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 35421 - 35574
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
35421 |
catcttccacctcactctcagacattcaaacaaaattctctgccgttgctgctctctccgtcgccgcagctctctcctgtcgtcgcctttgaccgatgct |
35520 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg |
175 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
35521 |
ctcgattctgacatcaccttcgccgttgtcgtttgcggcatcgtatcagccagg |
35574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 14677783 - 14677630
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
14677783 |
catcttccacctcactctcagacattcaaacaaaatcctctgccgttgccgctctctccgtcgccgcagctctctcctatcgtcacccttcaccaatgct |
14677684 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg |
175 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
14677683 |
ctcgattccgacatcaccttcgccgttgtcgtctgcagcatcgtatcagccagg |
14677630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 31100633 - 31100488
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31100633 |
catcttccacctcactctcagacattcaaacaaaattctttgccgtcgccactctctccgtcgccgcaactctctcctgtcgtcgcccttcaccaatgct |
31100534 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat |
167 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||| |||||||||| |
|
|
| T |
31100533 |
ctcgattccaacatcaccttcgccgttgtcgtctgtggcatcgtat |
31100488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 5658131 - 5658261
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5658131 |
catcttccacctcactctcagacattcaaacaaaattctttgccgt---------------cgccgcagctctctcctgtcgtcgcccttcaccaatgct |
5658215 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat |
167 |
Q |
| |
|
|| ||||| || ||||||||| |||||||||||| |||||||||| |
|
|
| T |
5658216 |
cttgattccaacatcaccttcgccgttgtcgtctgtggcatcgtat |
5658261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 33689060 - 33688978
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaa-ttctctgccgttgccgctctctctgtcgccgcagctctctcctgtcg |
103 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| | |||||| || | ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
33689060 |
catcttccacctcactcttagacattcaaacaagacttctctcccatcgccgctctctccgtcgccgcagctctctcatgtcg |
33688978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 29863122 - 29862969
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29863122 |
catcttccacctcactctcagacattcaaacaaaattctctgtcgctgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccgatgct |
29863023 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg |
175 |
Q |
| |
|
|||||||| ||| |||| || | ||||||| ||||||||||||||| ||||||| |
|
|
| T |
29863022 |
ctcgattccgacatcacttttgccgttgtcatctgcggcatcgtatcagccagg |
29862969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 11395 - 11242
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct |
121 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| || || |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11395 |
catcttccacctcactcccagacattcaaacaaaattctttgttgtcaccgctctctccgtcgccgcagctctctcttgtcgtcgcccttcaccaatgct |
11296 |
T |
|
| Q |
122 |
ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg |
175 |
Q |
| |
|
||||| || ||| ||||||||| |||||||||||||||||| | || ||||||| |
|
|
| T |
11295 |
ctcgaatccgacatcaccttcgccgttgtcgtctgcggcattgcatcagccagg |
11242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 22001074 - 22000988
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcc |
108 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22001074 |
catcttccacctcactttcagacattcaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcc |
22000988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 81 - 167
Target Start/End: Complemental strand, 33045148 - 33045062
Alignment:
| Q |
81 |
gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
33045148 |
gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccaacatcaccttcgtcgttgtcgtctgcggcatcgtat |
33045062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 10092908 - 10092985
Alignment:
| Q |
98 |
ctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
10092908 |
ctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagccagg |
10092985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 10092851 - 10092913
Alignment:
| Q |
22 |
catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcg |
84 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
10092851 |
catcttccacctcactctcagacattcaaacaaaattctctaacgtcgccgctctctctgtcg |
10092913 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 33045184 - 33045154
Alignment:
| Q |
30 |
acctcactctcagacattcaaacaaaattct |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33045184 |
acctcactctcagacattcaaacaaaattct |
33045154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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