View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17020_high_9 (Length: 372)
Name: NF17020_high_9
Description: NF17020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17020_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 28 - 327
Target Start/End: Complemental strand, 7161666 - 7161367
Alignment:
| Q |
28 |
gcatcatcatcttcctcctccatcactcctggagattcacttcaccaacagcctcttcccagtcttacgtttgacatcgtggctgaaattctttccaggc |
127 |
Q |
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| T |
7161666 |
gcatcatcatcttcctcctccatcactcctggagattcacttcaccaacagcctcttcccagtcttacgtttgacatcgtggctgaaattctttccaggc |
7161567 |
T |
|
| Q |
128 |
ttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccactttcgcgtttcaac |
227 |
Q |
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| T |
7161566 |
ttccagtcaaatccctcatgcaactcaaatcggtctgcaaatcctggaaatatcttatttcagattcaaatttcgccaagaaccactttcgcgtttcaac |
7161467 |
T |
|
| Q |
228 |
cacgcgccaccatcttgtctcagataaaaccaaaccctcactcaagtattaccctctctcctccgttttcacagaaatcacccctaccaccactcccttg |
327 |
Q |
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| T |
7161466 |
cacgcgccaccatcttgtctcagataaaaccaaaccctcactcaattattaccctctctcctccgttttcacagaaatcacccctaccaccactcccttg |
7161367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 7169530 - 7169393
Alignment:
| Q |
106 |
gtggctgaaattctttccaggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgcca |
205 |
Q |
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||||| |||||||| ||||||||||||||||| | |||||||||||| |||| ||||| || ||||||||||||||||| || |||||||| ||||| | |
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| T |
7169530 |
gtggcggaaattctctccaggcttccagtcaagtttctcatgcaactccaatccgtctgtaagtcctggaaatctcttatctccgattcaaaattcgcta |
7169431 |
T |
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| Q |
206 |
agaaccactttcgcgtttcaaccacgcgccaccatctt |
243 |
Q |
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| T |
7169430 |
agaatcaccttcgcttgtcaaccacgctccaccgtctt |
7169393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 7158387 - 7158440
Alignment:
| Q |
319 |
actcccttgaatcgaagatgaagcaggggaaggtattgaaaccaaatcagaatg |
372 |
Q |
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| T |
7158387 |
actcccttgaatcgaagatgaagcaggggaaggtattgaaaccaaatcagaatg |
7158440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 7175163 - 7175055
Alignment:
| Q |
123 |
caggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccactttcgcgtt |
222 |
Q |
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|||||||||||||||||||||| || | |||||||||| |||||||||||||||||| || ||||||||||||||| ||||||| || ||||||| |
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| T |
7175163 |
caggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatctctcatctcagattcaaatttcaccaagaagaaccttcgcgtg |
7175064 |
T |
|
| Q |
223 |
tcaaccacg |
231 |
Q |
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||||||||| |
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| T |
7175063 |
tcaaccacg |
7175055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 247
Target Start/End: Original strand, 11236913 - 11237045
Alignment:
| Q |
115 |
attctttccaggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccact |
214 |
Q |
| |
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||||| |||||||| |||||||||| ||||||||||||| |||| ||||| || |||||||||||||| || || ||| | || ||| ||| || ||| |
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| T |
11236913 |
attctctccaggctgccagtcaaatacctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaattcatcaaaaaacacc |
11237012 |
T |
|
| Q |
215 |
ttcgcgtttcaaccacgcgccaccatcttgtct |
247 |
Q |
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||| ||| || |||||||||| |||||| |||| |
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| T |
11237013 |
ttcacgtgtccaccacgcgcctccatctcgtct |
11237045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 24722586 - 24722641
Alignment:
| Q |
124 |
aggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatc |
179 |
Q |
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|||||||| ||||| |||||||||||| |||||| ||||||||| ||||||||||| |
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| T |
24722586 |
aggcttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatc |
24722641 |
T |
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