View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17021_high_3 (Length: 296)

Name: NF17021_high_3
Description: NF17021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17021_high_3
NF17021_high_3
[»] chr7 (8 HSPs)
chr7 (1-280)||(45270328-45270607)
chr7 (140-280)||(45293577-45293717)
chr7 (140-280)||(45302537-45302677)
chr7 (3-280)||(45273862-45274134)
chr7 (139-280)||(45282236-45282377)
chr7 (3-82)||(45282106-45282185)
chr7 (2-76)||(45293445-45293519)
chr7 (2-76)||(45302405-45302479)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 45270328 - 45270607
Alignment:
Q  1 ctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattcacctgcggtgatccgtctg 100  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45270328 ctaactgtgaatttttcagggaccaatgctgcttctgggatgatattgcagtcctggataacaataccagtattcatattcaccagcggtgatccgtctg 45270427  T
Q  101 cgacaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaat 200  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45270428 cgacaattacgttgtattcattatgatcataattgccttttctcacgatgatggtagagctttggatcaaggtggcagatgttccaaagatgaagtcaat 45270527  T
Q  201 ggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45270528 ggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggc 45270607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 45293577 - 45293717
Alignment:
Q  140 ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt 239  Q
    |||| |||||||| ||||||  |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||    
T  45293577 ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt 45293676  T
Q  240 ggtttgaacgtacaaagtgtcttggtaacctacgatatggc 280  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  45293677 ggtttgaacgtacaaagtgtcttggtaacccaggatatggc 45293717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 45302537 - 45302677
Alignment:
Q  140 ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt 239  Q
    |||| |||||||| ||||||  |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||    
T  45302537 ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt 45302636  T
Q  240 ggtttgaacgtacaaagtgtcttggtaacctacgatatggc 280  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  45302637 ggtttgaacgtacaaagtgtcttggtaacccaggatatggc 45302677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 280
Target Start/End: Original strand, 45273862 - 45274134
Alignment:
Q  3 aattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattcacctgcggtgatccgtctgcg 102  Q
    |||||||||| |||| || | ||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| |     |||||||||||||    
T  45273862 aattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtctgatccgtctgcg 45273961  T
Q  103 acaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatgg 202  Q
      ||||  |||| |||    |||  ||     ||  ||||| || ||||| ||||||  |||||||||||||||||||| ||||||||||||||||| ||    
T  45273962 gtaattgtgttgaattgccctttgccag----gc--tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacgg 45274055  T
Q  203 -taccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggc 280  Q
     |||| |||| || ||| ||||||||| | ||||||||| ||||||| |||||  ||||||||||||| ||||||||||    
T  45274056 ttaccagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggc 45274134  T

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Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 280
Target Start/End: Original strand, 45282236 - 45282377
Alignment:
Q  139 tttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgt 238  Q
    ||||| || ||||| ||||||  |||||||||||||||||||| ||||||||||||||||| |||||| |||| || ||| ||||||||| | || ||||    
T  45282236 tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggtacccgagacaagacaattgcggtagtactgtctgt 45282335  T
Q  239 tggtttgaacgtacaaagtgtcttggtaacctacgatatggc 280  Q
    || ||||||| |||||  ||||||||||||| ||||||||||    
T  45282336 tgctttgaacatacaagctgtcttggtaacccacgatatggc 45282377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 45282106 - 45282185
Alignment:
Q  3 aattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattca 82  Q
    |||||||||| |||| || | ||||||||||||||||| ||||||||| |||||||| |||||||||||||||| |||||    
T  45282106 aattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattca 45282185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 45293445 - 45293519
Alignment:
Q  2 taattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattca 76  Q
    ||||||||||| ||| ||| | |||||||||||||||||| ||||||||| | ||||| ||||||||||||||||    
T  45293445 taattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaataccagtattca 45293519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 45302405 - 45302479
Alignment:
Q  2 taattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattca 76  Q
    ||||||||||| ||| ||| | |||||||||||||||||| ||||||||| | ||||| ||||||||||||||||    
T  45302405 taattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaataccagtattca 45302479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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