View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17021_high_5 (Length: 238)
Name: NF17021_high_5
Description: NF17021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17021_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5941990 - 5942203
Alignment:
| Q |
1 |
cattaattccaaccaaagtctcaatttgctgcaccatcttttcaaacaaaaactcagatacatttcaactcatagaattatcaacgttccaaataactct |
100 |
Q |
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| T |
5941990 |
cattaattccaaccaaagtctcaatttgctgcaccatcttttcaaacaaaaacttagatacatttcaactc--agaattatcaacgttccaaataactct |
5942087 |
T |
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| Q |
101 |
tcaacccctttgcatgtgactttcattataaatatacaaaacttaatgtcacttctacaatccatcaaaatctctaaaacctttaattttttccaaaaat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| || ||||||||||||| |
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| T |
5942088 |
tcaacccctttgcatgtgact----ttataaatatacaaaacttaatgtcatttctacaatccatcgaaatctcttaaaccttcaa-tttttccaaaaat |
5942182 |
T |
|
| Q |
201 |
ctcaatatttgatatgggttt |
221 |
Q |
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||||| ||||||||||||||| |
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| T |
5942183 |
ctcaacatttgatatgggttt |
5942203 |
T |
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