View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17021_low_1 (Length: 943)
Name: NF17021_low_1
Description: NF17021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17021_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 828; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 828; E-Value: 0
Query Start/End: Original strand, 10 - 943
Target Start/End: Complemental strand, 54636873 - 54635940
Alignment:
| Q |
10 |
acatcatcatttcatgctccatatcatcattcaagttaataccctcgatcacaacatcaccttgaatatggcaattgatatcaattttaattagttcgca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636873 |
acatcatcatttcatgctccatatcatcattcaagttaataccctcgatcacaacatcaccttgaatatggcaattgatatcaattttaattagttcgca |
54636774 |
T |
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| Q |
110 |
ctctccctgcaatacagtagcaaggaattccatgataattacacaattcagatcagttccagatgcatctcactcacaggaacaagtaacttgacaaaca |
209 |
Q |
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| T |
54636773 |
ctctccctgcaatacagtagcaaggaattccatgataattacacaattcagatcagttccagatgcatctcactcacaggaacaagtaacttgacaaaca |
54636674 |
T |
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| Q |
210 |
gtggttttattaaaatcttgtnnnnnnngatatttattgaattttaactggaatggaatcgtcctgaactcgagcatatggtatgtttgtcaaatctgct |
309 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636673 |
gtggttttattaaaatcttgtaaaaaaagatatttattgaattttaactggaatggactcgtcctgaactcgagcatatggtatgtttgtcaaatctgct |
54636574 |
T |
|
| Q |
310 |
aaatgcnnnnnnnnnnnnnnnatcaagcaacaa-tgcaataaacggcaggagagggcctgcgcccagccaacaaagttaatacatcaaatccagccaata |
408 |
Q |
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| T |
54636573 |
aaatgcttttttttctttct-atcaagcaacaaatgcaataaacggcaggagagggcctgcgcccagccaacaaagttaatacatcaaatccagccaata |
54636475 |
T |
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| Q |
409 |
aggcaaaacagcacaaacaaaaattacattaaaagcctatgaacatagattatatgaacttatcttgccttcttcatttaagtattttcccactgttttt |
508 |
Q |
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| T |
54636474 |
aggcaaaacagcacaaacaaaaattacattaaaagcctatgaacatagattatatgaacttatcttgccttcttcatttaaatattttcccactcttttt |
54636375 |
T |
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| Q |
509 |
catttctcatttctggtatattgatgcctaatatgcttcgatcaagtctaagtaatcttaatgacgtttcggtttttacatgctcttcatgagtataggt |
608 |
Q |
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| T |
54636374 |
catttctcatttctggtatattgatgccgaatatgcttcgatcaagtctaagtaatcttaatgacgtttcggtttttacatgctcttcatgagtataggt |
54636275 |
T |
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| Q |
609 |
gcatgcatatatgcccaacatttataatccaaggcgcaagctaccaaaatgtaattagttattctggctctacttaataagcaggaaaacaagtttgagc |
708 |
Q |
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| T |
54636274 |
gcatgcatatatgcccaacatttataatccaaggcacaagctaccaaaatgtaattagttattctggctctacttaataagcaggaaaacaagtttgagc |
54636175 |
T |
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| Q |
709 |
tgcaaatgaatggcctatgaactatttgaagtttaaactatgagaaaatgtgcagcatatttcgttaagtactcgaaatggctgaaaataaaccagcact |
808 |
Q |
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| T |
54636174 |
tgcaaatgaatggcctatgaactatttgaagtttaaactatgagaaaatgtgcagcatatttcattaagtactcgaaatggctgaaaataaaccagcact |
54636075 |
T |
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| Q |
809 |
attgcaggaaggtaaaataagagattttccccccttttcatatcagaacctgtttgctacattttatgaggttccaagtcatctcaggaacatagcaact |
908 |
Q |
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| T |
54636074 |
attgcaggaaggtaaaataagagattttccccccttttcatatcagaacctgtttgctacattttatgaggttccaagtcatctcaggaacatagcaact |
54635975 |
T |
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| Q |
909 |
cgcagattataacaattgtttgccacagtaacacc |
943 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
54635974 |
cgcagattttaacaattgtttgccacagtaacacc |
54635940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 869 - 943
Target Start/End: Complemental strand, 54635932 - 54635858
Alignment:
| Q |
869 |
attttatgaggttccaagtcatctcaggaacatagcaactcgcagattataacaattgtttgccacagtaacacc |
943 |
Q |
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| T |
54635932 |
attttatgaggttccaagtcatctcaggaacatagcaactcgcagattttaacaattgtttgccacggtaacacc |
54635858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 1963746 - 1963694
Alignment:
| Q |
331 |
atcaagcaacaa-tgcaataaacggcaggagagggcctgcgcccagccaacaa |
382 |
Q |
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| T |
1963746 |
atcaagcaacaaatgcaataaacggcaggagagggcctgcgcccagccaacaa |
1963694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 382
Target Start/End: Original strand, 25460093 - 25460126
Alignment:
| Q |
349 |
aaacggcaggagagggcctgcgcccagccaacaa |
382 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
25460093 |
aaacggcaggagagggcctgcgcccagccaacaa |
25460126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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