View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17021_low_2 (Length: 571)

Name: NF17021_low_2
Description: NF17021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17021_low_2
NF17021_low_2
[»] chr5 (7 HSPs)
chr5 (22-450)||(20497220-20497651)
chr5 (15-205)||(34404750-34404940)
chr5 (15-205)||(26182551-26182741)
chr5 (24-205)||(17920105-17920285)
chr5 (17-162)||(20287215-20287360)
chr5 (22-205)||(7897233-7897415)
chr5 (502-557)||(20497113-20497168)
[»] chr4 (8 HSPs)
chr4 (15-205)||(22555625-22555816)
chr4 (23-205)||(11324585-11324767)
chr4 (15-203)||(19894132-19894320)
chr4 (22-205)||(24143792-24143975)
chr4 (17-205)||(23541896-23542084)
chr4 (22-160)||(11905748-11905886)
chr4 (23-162)||(46738622-46738761)
chr4 (22-205)||(15687016-15687200)
[»] chr7 (10 HSPs)
chr7 (15-206)||(48796937-48797126)
chr7 (15-205)||(12560531-12560721)
chr7 (15-205)||(30226720-30226910)
chr7 (15-153)||(14976084-14976222)
chr7 (15-153)||(15405560-15405698)
chr7 (17-154)||(3285669-3285806)
chr7 (15-199)||(7620733-7620917)
chr7 (22-131)||(11629298-11629407)
chr7 (22-154)||(11559871-11560003)
chr7 (22-122)||(24050109-24050209)
[»] chr1 (5 HSPs)
chr1 (17-207)||(11084974-11085164)
chr1 (15-205)||(40312540-40312730)
chr1 (15-162)||(33063037-33063184)
chr1 (17-205)||(52436133-52436321)
chr1 (17-154)||(45598698-45598835)
[»] chr6 (6 HSPs)
chr6 (15-207)||(19216606-19216798)
chr6 (17-205)||(16136897-16137085)
chr6 (22-206)||(20003742-20003926)
chr6 (17-154)||(32452641-32452778)
chr6 (15-205)||(9385266-9385456)
chr6 (16-154)||(15002528-15002666)
[»] chr3 (4 HSPs)
chr3 (17-205)||(8749693-8749881)
chr3 (17-162)||(9037359-9037504)
chr3 (17-205)||(9030738-9030926)
chr3 (405-440)||(39963060-39963095)
[»] chr8 (8 HSPs)
chr8 (15-205)||(17880055-17880245)
chr8 (15-203)||(8730582-8730770)
chr8 (15-203)||(17280539-17280727)
chr8 (22-148)||(37154898-37155023)
chr8 (17-162)||(18676444-18676588)
chr8 (17-154)||(33465528-33465665)
chr8 (44-205)||(39081587-39081748)
chr8 (22-154)||(22876673-22876808)
[»] chr2 (4 HSPs)
chr2 (16-206)||(13314281-13314471)
chr2 (15-206)||(18605912-18606103)
chr2 (4-162)||(18766319-18766477)
chr2 (17-138)||(29566666-29566787)
[»] scaffold0328 (1 HSPs)
scaffold0328 (22-203)||(16290-16471)
[»] scaffold0143 (1 HSPs)
scaffold0143 (17-154)||(36951-37088)
[»] scaffold0032 (1 HSPs)
scaffold0032 (62-130)||(103606-103673)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 22 - 450
Target Start/End: Complemental strand, 20497651 - 20497220
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatg 121  Q
    |||||||||||||||||||||||||||||||||| || | |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||     
T  20497651 taaaaacacgcagcttgaccatcaagaataaaggcgtggattccttaaataaaatagcgagtgcgtaaaacaaggcagggtgcaggtcaactgaaccata 20497552  T
Q  122 ccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaacagacttgctaatgagaa 221  Q
    ||||||||||||||||||||||||||| ||||| |||||||        | |||||| | ||||||||||| |||||||||||| |||||||||||||||    
T  20497551 ccaagatgttggcacatcttgtacaacatctcacatgaatatttattttaggcaaaagtgaagccaatataaaaatatccaacaaacttgctaatgagaa 20497452  T
Q  222 taatgaaaatggttgtttcgacatttttattattttcagaaaacgcaagacagttgtctgcttcaagagtctcttttctaattgtttttgatagaagatt 321  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  20497451 taatgaaaatggttgtttcgacatttttattattttcagagaacccaagacaattgtctgcttcaagagtctcttttctaattgtttttgatagaagttt 20497352  T
Q  322 attttttcttttcgaaaaaagactcttggagtgaataagagtttcttctctcatttttaattagtaaaacttaacacaactt---agaaatcaaaataaa 418  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  20497351 tttttttcttttcgaaaaaagactcttggagtgaataagagtttcttctctcatttttaattagtaaaacttaacacaacttttaagaaatcaaaataaa 20497252  T
Q  419 aaatattttcacaaagtaaacatattctaaac 450  Q
    ||||||||||||||||||||||||||||||||    
T  20497251 aaatattttcacaaagtaaacatattctaaac 20497220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 34404940 - 34404750
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||||||||||||||||||| |||||||||||| || | |||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  34404940 cctgtgctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggaagggtgcaggtcaactg 34404841  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    |||||||||| |||||||||||||| ||| |||| ||||| |||||||        | |||||| | ||||||||||||||||||||||||    
T  34404840 aaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 34404750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 26182741 - 26182551
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||||||||||||||||||| |||||||||||  || | |||||||||||||||   || || |||||||||||||||||||||||||||||    
T  26182741 cctgtgctaaaaacacgcagcttgaccaacaagaataaagacgtggattccttaaataaaatggtgcatgcgtaaaacaaggcagggtgcaggtcaactg 26182642  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    |||||||||| |||||||||||||| ||| |||| |||| ||||||||        | |||||| | ||| ||||||||||||||||||||    
T  26182641 aaccatgccaggatgttggcacatcgtgttcaacatctcctatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatccaaca 26182551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 17920285 - 17920105
Alignment:
Q  24 aaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatgcc 123  Q
    ||||||||||||||||||| ||| |||||||| || | |||||||||||||||| ||||||   ||||||||||||| ||||||||||||||||||||||    
T  17920285 aaaacacgcagcttgaccaacaacaataaaggcgtggattccttaaataaaatagcgcgtgctaaaaacaaggcagg-tgcaggtcaactgaaccatgcc 17920187  T
Q  124 aagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    | |||||||||||||| ||| |||| ||||| |||||||        | |||||| | ||||||||||||||||||||||||    
T  17920186 aggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 17920105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 20287215 - 20287360
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| |||||||||| |||||||||| |||||||||||  || | |||||||||||||||| |||||| | |||||||||||||||| ||||||||||||    
T  20287215 tgtgctaaaaacacgtagcttgaccaacaagaataaagacgtggattccttaaataaaatagcgcgtgcgaaaaacaaggcagggtggaggtcaactgaa 20287314  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctcatatgaata 162  Q
    |||||||| |||||||||||||  ||| |||| |||||| ||||||    
T  20287315 ccatgccaggatgttggcacattatgttcaacatctcatttgaata 20287360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 7897415 - 7897233
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatg 121  Q
    |||| |||||||||||||||| ||||||||||   || | |||||||||||||||| |||||| ||||||| ||| | ||||||||||||||||| ||||    
T  7897415 taaagacacgcagcttgaccaacaagaataaatacgtggattccttaaataaaatagcgcgtgcgtaaaactaggtaaggtgcaggtcaactgaa-catg 7897317  T
Q  122 ccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    ||| ||||||| |||||| ||| |||| ||||| |||||||        | |||||| | | ||||||||||||||||||||||    
T  7897316 ccaggatgttgacacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgacgccaatatacaaatatccaaca 7897233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 20497168 - 20497113
Alignment:
Q  502 gtattgaaatgcaaacaactttgaacaatgaaaatccatttttaagacaaaaaatg 557  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20497168 gtattgaaatgcaaacaactttgaacaatggaaatccatttttaagacaaaaaatg 20497113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 22555625 - 22555816
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| |||||||||||||||||||||||||||||||||| ||   |||||||||||||||  ||| || |||||||||||||||||||||||||||||    
T  22555625 cctgtgctaaaaacacgcagcttgaccatcaagaataaaggcgtgaattccttaaataaaattgcgcatgcgtaaaacaaggcagggtgcaggtcaactg 22555724  T
Q  115 aacc-atgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||||||        | |||||| | ||||||||||||||||||||||||    
T  22555725 aaccaatgccaagatgttggcacatcttgtacaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 22555816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 11324767 - 11324585
Alignment:
Q  23 aaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatgc 122  Q
    ||||| ||||||||| ||||||||||||||||| || | ||  |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  11324767 aaaaagacgcagctttaccatcaagaataaaggcgtggattggttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgc 11324668  T
Q  123 caagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    |||||||||||||||||||||||||| ||||| |||||||        | |||||| | ||||||||||||||||||||||||    
T  11324667 caagatgttggcacatcttgtacaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 11324585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 19894320 - 19894132
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||||||||||||||||||| |||||||||||| || | |||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  19894320 cctgtgctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgtgtaaaacaaggcagggtgcaggtcaactg 19894221  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaa 203  Q
    || ||||||| |||||||||||||| ||| |||| ||||| |||||||        | |||||| | ||||||||||||||| ||||||    
T  19894220 aatcatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaaaatccaa 19894132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 24143792 - 24143975
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatg 121  Q
    |||||||| |||||||||||| |||||||||||| || | |||||||||||||||| |||||| | ||||| ||||| |||| |||||||||||||||||    
T  24143792 taaaaacatgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgaaaaactaggcaaggtgtaggtcaactgaaccatg 24143891  T
Q  122 ccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    ||| |||||||||||||| ||| |||| |||||||||||||        | |||||| | ||| ||||||||||||||||||||    
T  24143892 ccaggatgttggcacatcgtgttcaacatctcatatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatccaaca 24143975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 23541896 - 23542084
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| |||||| |||||||||||||  |||||||||||| || | |||||||||||||||| |||||| | |||||||||||  || |||||||| ||||    
T  23541896 tgtgctaaaaatacgcagcttgaccgacaagaataaaggcgtggattccttaaataaaataacgcgtgcgaaaaacaaggcaaagtacaggtcaattgaa 23541995  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    |||||||| ||||||| |||||||||| |||| ||||| |||||||        | |||||| | ||||||||||||||||||||||||    
T  23541996 ccatgccatgatgttgacacatcttgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 23542084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 11905748 - 11905886
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatg 121  Q
    ||||| ||||||||||||||| ||||||| |||| || | |||||||||||||  | |||||| ||||||||||||| ||| | ||||||||||||||||    
T  11905748 taaaagcacgcagcttgaccaacaagaattaaggcgtggattccttaaataaataaacgcgtgtgtaaaacaaggcaaggtaccggtcaactgaaccatg 11905847  T
Q  122 ccaagatgttggcacatcttgtacaacgtctcatatgaa 160  Q
    ||| |||||||| ||||| ||| |||| |||||| ||||    
T  11905848 ccaggatgttggaacatcgtgtccaacatctcatttgaa 11905886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 46738761 - 46738622
Alignment:
Q  23 aaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatgc 122  Q
    |||||||||||| ||||||| |||||||||||  ||   |||||||||||||| | || ||| ||||||||| | ||| ||||||||||||||||||||     
T  46738761 aaaaacacgcagtttgaccaacaagaataaagacgtgaattccttaaataaaaaagcgtgtgcgtaaaacaaagtaggatgcaggtcaactgaaccatgt 46738662  T
Q  123 caagatgttggcacatcttgtacaacgtctcatatgaata 162  Q
    || |||||||||||||| ||| |||| ||||| |||||||    
T  46738661 caggatgttggcacatcgtgttcaacatctcacatgaata 46738622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 15687200 - 15687016
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtca-actgaaccat 120  Q
    ||||| ||||||||||||||| ||||||| |||| || | |||||||||||||  | | |||| ||||||||||||| ||| |||| || || |||||||    
T  15687200 taaaagcacgcagcttgaccaacaagaattaaggcgtggattccttaaataaacaaacacgtgcgtaaaacaaggcaaggtacagggcataccgaaccat 15687101  T
Q  121 gccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    |||| |||||||| ||||| |||||||| || ||  ||||||        | |||||| | ||||||| ||||||||||||||||    
T  15687100 gccaggatgttggaacatcgtgtacaacatcacacttgaatatttgttttaggcaaaagtgaagccaacatacaaatatccaaca 15687016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 48797126 - 48796937
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| |||||||| |||||||||||| |||||||||||| || | |||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  48797126 cctgtgctaaaaacatgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaggtcaactg 48797027  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaacag 206  Q
    |||||||||| |||||||||||||| ||| |||| ||||  |||||||        | |||||| | |||||||||||||||||||||||||    
T  48797026 aaccatgccaggatgttggcacatcgtgttcaacatctc--atgaatatttattttaggcaaaagtgaagccaatatacaaatatccaacag 48796937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 12560721 - 12560531
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| |||||||| |||||||||| | ||||||||||||||| | |||||||||||||||| |||||| |||||||||||||||||| ||||||||||    
T  12560721 cctgtgctaaaaacaagcagcttgactaacaagaataaaggtgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtggaggtcaactg 12560622  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    |||||||||| |||||||||||||| ||| |||| ||||| |||||||        | |||||| | ||| ||||||||||||||||||||    
T  12560621 aaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatccaaca 12560531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 30226720 - 30226910
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||||||||||||||||||| |||||||||||| || | ||||||||||| |||| ||| || |||||||||||||||||||||||||||||    
T  30226720 cctgtgctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaatataatagcgcatgcgtaaaacaaggcagggtgcaggtcaactg 30226819  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    || ||||||| |||||||||||||| ||| |||| ||||  |||||||        | |||||| | ||||||||||||||||||||||||    
T  30226820 aatcatgccaggatgttggcacatcgtgtccaacatctcccatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 30226910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 14976084 - 14976222
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||||||||||||||||||| |||||||||||| || | |||||||||||||||| |||||| |||||||||||||||||||| |||||||     
T  14976084 cctgtgctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaagtcaacta 14976183  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctc 153  Q
    |||||||||| ||| |||||||||| ||| |||| ||||    
T  14976184 aaccatgccaggatattggcacatcgtgttcaacatctc 14976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 15405560 - 15405698
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||||||||||||||||||| |||||||||||| || | |||||||||||||||| |||||| |||||||||||||||||||| |||||||     
T  15405560 cctgtgctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaagtcaacta 15405659  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctc 153  Q
    |||||||||| ||| |||||||||| ||| |||| ||||    
T  15405660 aaccatgccaggatattggcacatcgtgttcaacatctc 15405698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 3285806 - 3285669
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| ||||||||||||||||||||| ||||||||||   || | |||||||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  3285806 tgtgctaaaaacacgcagcttgaccaacaagaataaatacgtggattccttaaataaaatagcacgtgcgtaaaacaaggcagggtgcaggtcaactgaa 3285707  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctca 154  Q
    |||||||| |||||||||| ||| ||| |||| |||||    
T  3285706 ccatgccaggatgttggcatatcgtgttcaacatctca 3285669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 7620733 - 7620917
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||||||||||| ||||||| |||||||||| | || | | |||||||||||||| |||||| ||||||||||||||| |||| |||||| |    
T  7620733 cctgtgctaaaaacacgcagtttgaccaacaagaataaaagcgttgataccttaaataaaatagcgcgtgcgtaaaacaaggcaggatgcatgtcaaccg 7620832  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatat 199  Q
    |||| ||||| ||||||| |||||| |||  ||| ||||| |||||||        | |||||||| ||||||||||||||||||    
T  7620833 aaccttgccaggatgttgacacatcgtgtttaacatctcacatgaatatttattttaggcaaaaatgaagccaatatacaaatat 7620917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 11629298 - 11629407
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatg 121  Q
    ||||||||||||||||||||| |||||||||| | || | |||||| ||||||| | || ||| ||||||||||||| ||||||||||||||||||||||    
T  11629298 taaaaacacgcagcttgaccaacaagaataaaagcgtggattcctttaataaaaaagcgtgtgcgtaaaacaaggcaaggtgcaggtcaactgaaccatg 11629397  T
Q  122 ccaagatgtt 131  Q
    ||| ||||||    
T  11629398 ccaggatgtt 11629407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 11560003 - 11559871
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatg 121  Q
    ||||| ||||||||||||||| |||||||||||| || | |||||||||||||  | |||||| | ||||||||||| | |  ||||||||| |||||||    
T  11560003 taaaagcacgcagcttgaccaacaagaataaaggcgtggattccttaaataaataaacgcgtgcgaaaaacaaggcaagctataggtcaactaaaccatg 11559904  T
Q  122 ccaagatgttggcacatcttgtacaacgtctca 154  Q
    ||| ||| |||| ||||| ||| |||| |||||    
T  11559903 ccaggatattggaacatcgtgtccaacatctca 11559871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 24050109 - 24050209
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatg 121  Q
    ||||| || |||||||||||| ||| ||| |||| ||   |||||||||||||  | ||||||  |||||| ||||| ||| ||||||||||||||||||    
T  24050109 taaaagcatgcagcttgaccaacaataattaaggcgtgaattccttaaataaataaacgcgtgcataaaaccaggcaaggtacaggtcaactgaaccatg 24050208  T
Q  122 c 122  Q
    |    
T  24050209 c 24050209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 11085164 - 11084974
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| ||||||||||||||||||||| ||||||| |||| || | |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||    
T  11085164 tgtgctaaaaacacgcagcttgaccaacaagaattaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaggttaactgaa 11085065  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaacaga 207  Q
    |||||||| |||||||||||||| ||| |||| ||||| |||||||        | |||||| | ||||||||||| ||||||||||||||    
T  11085064 ccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatataaatatccaacaga 11084974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 40312730 - 40312540
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||||||| ||||||||||| |||||||||||  || | |||||||| ||||||| || ||| ||||||||||||| |||||||||||||||    
T  40312730 cctgtgctaaaaacacacagcttgaccaacaagaataaagacgtggattccttaattaaaataacgtgtgtgtaaaacaaggcaaggtgcaggtcaactg 40312631  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||||        | |||||| | |||||||| |||||||||||||||    
T  40312630 aaccatgccaggatgttggcacatcttgtacaacatctcacatgaatattaattttaggcaaaagtgaagccaatctacaaatatccaaca 40312540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 33063037 - 33063184
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||| ||||||||||||||| |||||||||||| || | || ||||||||||||| |||||| ||||||||||||| |||||||||||||||    
T  33063037 cctgtgctaaaatcacgcagcttgaccaacaagaataaaggcgtggatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtgcaggtcaactg 33063136  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaata 162  Q
    |||||||||| |||||||||||||| ||| |||| ||||| |||||||    
T  33063137 aaccatgccaggatgttggcacatcgtgttcaacatctcacatgaata 33063184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 52436321 - 52436133
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| ||||||||||||||||||||| ||| |||||||  || | ||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||    
T  52436321 tgtgctaaaaacacgcagcttgaccaacaaaaataaagacgttgattccttaaataaaatagtgcgtgcgtaaaacaaggcaaggtgcaggtcaactgaa 52436222  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    |||||| | |||||||||||||| ||| |||| |||||  ||||||        | ||||||| |||||||||||||||||||||||||    
T  52436221 ccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaaacaaagccaatatacaaatatccaaca 52436133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 45598835 - 45598698
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| ||||||||||||||||||||| |||||||||||| || | |||||||||||||| | || ||| |||||||||| ||||||||||||||||||||    
T  45598835 tgtgctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaacagcgtgtgcgtaaaacaagacagggtgcaggtcaactgaa 45598736  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctca 154  Q
    |||||||| |||||||||||||| ||| |||| |||||    
T  45598735 ccatgccaggatgttggcacatcgtgttcaacatctca 45598698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 19216606 - 19216798
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||||||||||||||||||| |||||||||||| || | |||||||||||||||| |||||| |||||| |||||||||||||||||||||     
T  19216606 cctgtgctaaaaacacgcagcttgaccaacaagaataaaggcgtgggttccttaaataaaatagcgcgtgcgtaaaataaggcagggtgcaggtcaactt 19216705  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaacaga 207  Q
    |||||||||| ||| |||||||||| ||| |||| ||||| |||||||        | |||||| | ||||||||| ||||||||||||||||    
T  19216706 aaccatgccaggatattggcacatcgtgttcaacatctcacatgaatatttattttaggcaaaagtgaagccaatagacaaatatccaacaga 19216798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 16137085 - 16136897
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| |||||||||||| |||||||| |||||||||||| ||   ||||||||||||||||  ||||  |||||||||||||| ||||||||||||||||    
T  16137085 tgtgctaaaaacacgcaacttgaccaacaagaataaaggcgtgcattccttaaataaaatagtgcgtctgtaaaacaaggcagagtgcaggtcaactgaa 16136986  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    ||||| || |||||||||||||| ||| |||| ||||| |||||||          |||||| | ||||||||||||||||||||||||    
T  16136985 ccatgacaggatgttggcacatcgtgttcaacatctcacatgaatatttgtttttggcaaaagtgaagccaatatacaaatatccaaca 16136897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 20003742 - 20003926
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatg 121  Q
    |||||||||||| |||||||| |||||||||| |||| | |||||||||||||| | ||| || ||||||||||||| |||||| ||||||| |||||||    
T  20003742 taaaaacacgcaacttgaccaacaagaataaaagtgtggattccttaaataaaaaagcgcatgcgtaaaacaaggcaaggtgcaagtcaactaaaccatg 20003841  T
Q  122 ccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaacag 206  Q
    | | ||||||| |||||| ||| |||| || || |||||||        | |||||| | |||||||||||||||||||||||||    
T  20003842 ctaggatgttgacacatcgtgttcaacatcccacatgaatatttcttttaggcaaaagtgaagccaatatacaaatatccaacag 20003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 32452641 - 32452778
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| ||||| ||| |||||||||||  ||||||||||| || | |||||||||||||||| |||||| | ||||||||||| | |||| ||||||||||    
T  32452641 tgtgctaaaagcacacagcttgaccaataagaataaaggcgtggattccttaaataaaataacgcgtgggaaaaacaaggcaagatgcatgtcaactgaa 32452740  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctca 154  Q
    |||||||| |||||||||||||| ||| |||| |||||    
T  32452741 ccatgccaggatgttggcacatcgtgtccaacatctca 32452778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 9385266 - 9385456
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| || ||||||| |||||||||| |||||||||||| || | ||||||||||||| ||  || || | ||||||||||| ||| |||||||||||    
T  9385266 cctgtgctataaacacgtagcttgaccaacaagaataaaggcgtggattccttaaataaactagtgcatgcgaaaaacaaggcaaggtccaggtcaactg 9385365  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    ||||||||   |||||||||||||| ||| |||| |||||  ||||||        | |||||| | || |||||||||||||||||||||    
T  9385366 aaccatgcagggatgttggcacatcgtgtccaacatctcacttgaatatttgttttaagcaaaagtgaatccaatatacaaatatccaaca 9385456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 15002666 - 15002528
Alignment:
Q  16 ctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactga 115  Q
    ||||| ||||| |||||| |||||||| ||||| |||||| || | ||||||||| ||  || |||||| | |||||||||||  |||||||||||||||    
T  15002666 ctgtgctaaaagcacgcaccttgaccaacaagagtaaaggcgtggattccttaaaaaagttaacgcgtgcgaaaaacaaggcaatgtgcaggtcaactga 15002567  T
Q  116 accatgccaagatgttggcacatcttgtacaacgtctca 154  Q
    ||||||||| |||||||||||||| ||| |||| |||||    
T  15002566 accatgccacgatgttggcacatcgtgtccaacatctca 15002528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 8749693 - 8749881
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| ||||||||||||||||||||| |||||||||||| || | ||||||||||||||||  || || ||||||||||||| |||||| ||||||||||    
T  8749693 tgtgctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagagcatgcgtaaaacaaggcaaggtgcaagtcaactgaa 8749792  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    |||||||| |||||||||||||| ||| |||| ||||| |||||||        | |||||| | ||||||||||||||||||||||||    
T  8749793 ccatgccaggatgttggcacatcatgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 8749881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 9037359 - 9037504
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| ||||||||||||||||||||| |||||||||||| || | ||||||||||||||||  ||||| ||||||||||||| |||||| ||||||||||    
T  9037359 tgtgctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagtgcgtgcgtaaaacaaggcaaggtgcacgtcaactgaa 9037458  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctcatatgaata 162  Q
    |||||||| |||||||||||||| ||| |||| ||||| |||||||    
T  9037459 ccatgccaggatgttggcacatcgtgttcaacatctcacatgaata 9037504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 9030926 - 9030738
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| ||||||||||||||||||||| || |||||||| ||| | ||| |||||||||||| ||||||  |||||| || ||| |||||| |||||||||    
T  9030926 tgtgctaaaaacacgcagcttgaccaacatgaataaagatgtggattctttaaataaaatagcgcgtgcataaaacgagacagtgtgcagatcaactgaa 9030827  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    |||||||| ||||||| |||||| ||| |||  ||||| |||||||        | |||||| | ||||||||||| ||||||||||||    
T  9030826 ccatgccaggatgttgacacatcgtgttcaatatctcacatgaatatttgttttaggcaaaagtgaagccaatatataaatatccaaca 9030738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 39963095 - 39963060
Alignment:
Q  405 gaaatcaaaataaaaaatattttcacaaagtaaaca 440  Q
    |||||||||||||||||| |||||||||||||||||    
T  39963095 gaaatcaaaataaaaaatgttttcacaaagtaaaca 39963060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 17880245 - 17880055
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| |||||||||||| |||||||| ||||||||||  ||| | ||||||| |||||||| |||||| ||||||||||||| |||||||||||||||    
T  17880245 cctgtgctaaaaacacgcaacttgaccaacaagaataaaaatgtggattccttagataaaatagcgcgtgcgtaaaacaaggcaaggtgcaggtcaactg 17880146  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
    ||||||||||||||||||||||||| ||| |||| ||||| ||| |||        | |||||| | ||||||||||||||| ||||||||    
T  17880145 aaccatgccaagatgttggcacatcgtgttcaacatctcacatgcatatttgttttaggcaaaagtgaagccaatatacaaagatccaaca 17880055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 8730582 - 8730770
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||||||||||||||||||| |||||||||||   | | || ||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  8730582 cctgtgctaaaaacacgcagcttgaccaacaagaataaagacatggattgcttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaggtcaactg 8730681  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaa 203  Q
    |||||||||| ||||||| |||||| ||| |||| ||||| |||||||        | |||||| | ||| ||||||||||||||||||    
T  8730682 aaccatgccaggatgttgtcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatccaa 8730770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 17280539 - 17280727
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||||||||||||||||| ||| |||||||||||| || | |||||||||||||||| |||||| | ||||||||||| ||| || ||||||||    
T  17280539 cctgtgctaaaaacacgcagcttggccaacaagaataaaggggtggattccttaaataaaatagcgcgtgcgaaaaacaaggcaaggtacaagtcaactg 17280638  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaa 203  Q
    |||||||||| ||||||| |||||||||| |||| ||||| |||||||        | |||||| | ||||||||||||||||||||||    
T  17280639 aaccatgccatgatgttgacacatcttgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaa 17280727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 37155023 - 37154898
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatg 121  Q
    ||||||||||||||||||||| |||||||||||  ||   ||||||||| |||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  37155023 taaaaacacgcagcttgaccaacaagaataaagacgtgaattccttaaa-aaaatagcgcgtgcgtaaaacaacgcagggtgcaggtcaactgaaccatg 37154925  T
Q  122 ccaagatgttggcacatcttgtacaac 148  Q
    ||| |||||||||||||| ||| ||||    
T  37154924 ccaggatgttggcacatcgtgttcaac 37154898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 18676444 - 18676588
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| |||| |||||||||||||||| ||||||| ||||  | | |||||||||||||||| | |||| ||||||||||||||||| |||||||||||||    
T  18676444 tgtgctaaatacacgcagcttgaccaacaagaattaaggcatggattccttaaataaaatagcacgtgcgtaaaacaaggcagggt-caggtcaactgaa 18676542  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctcatatgaata 162  Q
    |||||||| |||||||||||||| ||  |||| ||||| |||||||    
T  18676543 ccatgccaggatgttggcacatcgtgctcaacatctcacatgaata 18676588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 33465665 - 33465528
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| ||||| ||| ||||||||||| ||||||||||||  | | ||||||||||||||||  ||||| | ||||||||||| |||||||||||||||||    
T  33465665 tgtgctaaaagcacacagcttgaccaacaagaataaaggcatggattccttaaataaaataatgcgtgcgaaaaacaaggcaaggtgcaggtcaactgaa 33465566  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctca 154  Q
    |||||||| |||||||||||||| ||| |||| |||||    
T  33465565 ccatgccaggatgttggcacatcgtgtccaacatctca 33465528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 39081587 - 39081748
Alignment:
Q  44 caagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatgccaagatgttggcacatcttgt 143  Q
    |||||||||||| || | |||||||||||||||| ||| || |||||||||||||||||||||||||||| ||||||| || ||||||| |||  | |||    
T  39081587 caagaataaaggcgtggattccttaaataaaatagcgcatgcgtaaaacaaggcagggtgcaggtcaactaaaccatgtcaggatgttgacacgccgtgt 39081686  T
Q  144 acaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaaca 205  Q
     |||| ||||| |||||||        | |||||| | ||||||||||||||||||||||||    
T  39081687 tcaacatctcacatgaatatttattttaggcaaaagtgaagccaatatacaaatatccaaca 39081748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 22876673 - 22876808
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaa----atatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaac 117  Q
    ||||| ||||||||||||||| |||||||||||  || | |||||||||||||    | | | |||| | ||||||||||| ||||||| ||||||||||    
T  22876673 taaaagcacgcagcttgacca-caagaataaagacgtggattccttaaataaataaaaaaacacgtgcgaaaaacaaggcaaggtgcagatcaactgaac 22876771  T
Q  118 catgccaagatgttggcacatcttgtacaacgtctca 154  Q
    ||||||| |||||||| ||||||||| |||| |||||    
T  22876772 catgccaggatgttgggacatcttgtccaacatctca 22876808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 13314471 - 13314281
Alignment:
Q  16 ctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactga 115  Q
    ||||| ||||| |||||| |||||||| |||||||||||| || | ||||| |||||||||| |||||| | ||||||||||| ||||||||||||||||    
T  13314471 ctgtgctaaaagcacgcaacttgaccaacaagaataaaggcgtggattcctcaaataaaataacgcgtgtgaaaaacaaggcaaggtgcaggtcaactga 13314372  T
Q  116 accatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaacag 206  Q
    ||||| |||||||||||||||||| ||| |||| |||||  ||||||        | |||||| | ||||||| |||||||||||||||||    
T  13314371 accattccaagatgttggcacatcatgtccaacatctcacttgaatatttgttttaggcaaaagtgaagccaacatacaaatatccaacag 13314281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 18606103 - 18605912
Alignment:
Q  15 cctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactg 114  Q
    |||||| ||| ||||||||||||||||| |||||||||||  || | |||||||| |||||||  | ||| ||||||||||| |||||||||||||| ||    
T  18606103 cctgtgctaagaacacgcagcttgaccaacaagaataaagacgtggattccttaagtaaaatagtgtgtgcgtaaaacaaggtagggtgcaggtcaattg 18606004  T
Q  115 aaccatgccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaacag 206  Q
    ||| |||||| |||||||||||||| ||| |||| ||||| |||||||        | |||||| | |||||||||||||||||||||||||    
T  18606003 aactatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacag 18605912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 18766319 - 18766477
Alignment:
Q  4 aacgagcagaacctgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtg 103  Q
    ||||| |||| |||||| |||||||| ||| ||||| || || ||||||| | || | |||||||||||||||| |||||| ||||||||||| | ||||    
T  18766319 aacgatcagatcctgtgctaaaaacatgcaacttgaacaacacgaataaaagcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggtaaggtg 18766418  T
Q  104 caggtcaactgaaccatgccaagatgttggcacatcttgtacaacgtctcatatgaata 162  Q
    |||||||||||||||||| || |||||||||||||| ||| |||| ||||| |||||||    
T  18766419 caggtcaactgaaccatggcaggatgttggcacatcatgttcaacatctcacatgaata 18766477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 29566666 - 29566787
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| ||||| |||||| |||||||| |||||||||||| || | |||||||||||||||| |||||| | |||||||||||  ||||||||||||||||    
T  29566666 tgtgctaaaagcacgcaacttgaccaacaagaataaaggcgtggattccttaaataaaataacgcgtgcgaaaaacaaggcaatgtgcaggtcaactgaa 29566765  T
Q  117 ccatgccaagatgttggcacat 138  Q
    |||||||| |||||||||||||    
T  29566766 ccatgccaggatgttggcacat 29566787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 16471 - 16290
Alignment:
Q  22 taaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatg 121  Q
    ||||||||||||||||||||| |||||||||||  ||   |||||||||||||||| |||||| |||||| |||||||||||||||| || |||||||||    
T  16471 taaaaacacgcagcttgaccaacaagaataaagacgtgcattccttaaataaaatagcgcgtgcgtaaaataaggcagggtgcaggttaattgaaccatg 16372  T
Q  122 ccaagatgttggcacatcttgtacaacgtctcatatgaatannnnnnnnacgcaaaaataaagccaatatacaaatatccaa 203  Q
    | | |||||||||||||| ||| |||| ||||| |||||||        | |||||| | ||||||||||||||||||||||    
T  16371 ctaggatgttggcacatcgtgttcaacatctcacatgaatatttattttaggcaaaagtgaagccaatatacaaatatccaa 16290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 36951 - 37088
Alignment:
Q  17 tgtgttaaaaacacgcagcttgaccatcaagaataaaggtgtagtttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaa 116  Q
    |||| ||||| ||| ||||||||||| ||||||||||||  | | ||||||||||||||||  ||||| | ||||||||||| |||||||||||||||||    
T  36951 tgtgctaaaagcacacagcttgaccaacaagaataaaggcatggattccttaaataaaataatgcgtgcgaaaaacaaggcaaggtgcaggtcaactgaa 37050  T
Q  117 ccatgccaagatgttggcacatcttgtacaacgtctca 154  Q
    |||||||| |||||||||||||| ||| |||| |||||    
T  37051 ccatgccaggatgttggcacatcgtgtccaacatctca 37088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 103606 - 103673
Alignment:
Q  62 ttccttaaataaaatatcgcgtgagtaaaacaaggcagggtgcaggtcaactgaaccatgccaagatgt 130  Q
    |||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||| |||||    
T  103606 ttccttaaataaaataacgcgtgcg-aaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgt 103673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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