View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17021_low_3 (Length: 311)
Name: NF17021_low_3
Description: NF17021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17021_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 14568347 - 14568595
Alignment:
| Q |
18 |
aatctggcatctaatgcatgcatgtgatgttatatgttccacacaattttgacacgaaagcttatttgtcataattgatagatctatgannnnnnnnnnn |
117 |
Q |
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| T |
14568347 |
aatctggcatctaatgcatgcatgtgatgttatatgttccacacaattttgacacgaaagcttatttgtcataattgatagatctatgattttccttttc |
14568446 |
T |
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| Q |
118 |
nnnnnnccccttaatatatagagaggataatgcatgtattgttaaggttcatgtatgtccaatttcctcttttgtattcttttattgataaattggtgg- |
216 |
Q |
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| T |
14568447 |
ttttt-ccccttaatatatagagaggataatgcttgtattgttaaggttcatgtatgttcaatttcctcttttgtattcttctattgataaattggtggt |
14568545 |
T |
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| Q |
217 |
-tatatgttagactaaaaattttgtttttgaaaataatacgtgttaatga |
265 |
Q |
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| T |
14568546 |
atatatgttagactaacaattttgtttttgaaaataatatgtgttaatga |
14568595 |
T |
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