View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17021_low_5 (Length: 296)
Name: NF17021_low_5
Description: NF17021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17021_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 45270328 - 45270607
Alignment:
| Q |
1 |
ctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattcacctgcggtgatccgtctg |
100 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45270328 |
ctaactgtgaatttttcagggaccaatgctgcttctgggatgatattgcagtcctggataacaataccagtattcatattcaccagcggtgatccgtctg |
45270427 |
T |
|
| Q |
101 |
cgacaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaat |
200 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45270428 |
cgacaattacgttgtattcattatgatcataattgccttttctcacgatgatggtagagctttggatcaaggtggcagatgttccaaagatgaagtcaat |
45270527 |
T |
|
| Q |
201 |
ggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45270528 |
ggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggc |
45270607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 45293577 - 45293717
Alignment:
| Q |
140 |
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt |
239 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
45293577 |
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt |
45293676 |
T |
|
| Q |
240 |
ggtttgaacgtacaaagtgtcttggtaacctacgatatggc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
45293677 |
ggtttgaacgtacaaagtgtcttggtaacccaggatatggc |
45293717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 45302537 - 45302677
Alignment:
| Q |
140 |
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt |
239 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
45302537 |
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt |
45302636 |
T |
|
| Q |
240 |
ggtttgaacgtacaaagtgtcttggtaacctacgatatggc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
45302637 |
ggtttgaacgtacaaagtgtcttggtaacccaggatatggc |
45302677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 280
Target Start/End: Original strand, 45273862 - 45274134
Alignment:
| Q |
3 |
aattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattcacctgcggtgatccgtctgcg |
102 |
Q |
| |
|
|||||||||| |||| || | ||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
45273862 |
aattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtctgatccgtctgcg |
45273961 |
T |
|
| Q |
103 |
acaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatgg |
202 |
Q |
| |
|
|||| |||| ||| ||| || || ||||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
45273962 |
gtaattgtgttgaattgccctttgccag----gc--tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacgg |
45274055 |
T |
|
| Q |
203 |
-taccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggc |
280 |
Q |
| |
|
|||| |||| || ||| ||||||||| | ||||||||| ||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
45274056 |
ttaccagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggc |
45274134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 280
Target Start/End: Original strand, 45282236 - 45282377
Alignment:
| Q |
139 |
tttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgt |
238 |
Q |
| |
|
||||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||| || ||| ||||||||| | || |||| |
|
|
| T |
45282236 |
tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggtacccgagacaagacaattgcggtagtactgtctgt |
45282335 |
T |
|
| Q |
239 |
tggtttgaacgtacaaagtgtcttggtaacctacgatatggc |
280 |
Q |
| |
|
|| ||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
45282336 |
tgctttgaacatacaagctgtcttggtaacccacgatatggc |
45282377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 45282106 - 45282185
Alignment:
| Q |
3 |
aattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattca |
82 |
Q |
| |
|
|||||||||| |||| || | ||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
45282106 |
aattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattca |
45282185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 45293445 - 45293519
Alignment:
| Q |
2 |
taattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattca |
76 |
Q |
| |
|
||||||||||| ||| ||| | |||||||||||||||||| ||||||||| | ||||| |||||||||||||||| |
|
|
| T |
45293445 |
taattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaataccagtattca |
45293519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 45302405 - 45302479
Alignment:
| Q |
2 |
taattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattca |
76 |
Q |
| |
|
||||||||||| ||| ||| | |||||||||||||||||| ||||||||| | ||||| |||||||||||||||| |
|
|
| T |
45302405 |
taattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaataccagtattca |
45302479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University