View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17022_high_1 (Length: 339)
Name: NF17022_high_1
Description: NF17022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17022_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 39335246 - 39335040
Alignment:
| Q |
13 |
cagaacttgcagatgtctgattgttatgaatggattaaatattttgcttatgagaatgatgaacaactcttcttgatatcttgctggtttatttgaagaa |
112 |
Q |
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| T |
39335246 |
cagaacttgcagatgtctgattgttatgaatggattaaatattttgcttatgagaatgatgaacaactcttattgatatcttgttagtttatttgaagaa |
39335147 |
T |
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| Q |
113 |
cccgcaataaagagtttatttctcacaactcctaggcagattgaaaagttttgaatctcattaacatgcagcacgaagcaactattaggtgctttggttc |
212 |
Q |
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| T |
39335146 |
cccgcaatgaagagtttatttcacacaactcctaggcagattgaaaagttttgaatctcattaacatgcagcacgaagcaactattaggtgctttggttc |
39335047 |
T |
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| Q |
213 |
agtcaac |
219 |
Q |
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||||||| |
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| T |
39335046 |
agtcaac |
39335040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 216 - 323
Target Start/End: Complemental strand, 39334993 - 39334886
Alignment:
| Q |
216 |
caacggttaaattaaatattgaaggtagctctcttgataatctagatcgctatggttcaaaggtttaattaaatacactaatggtaattaggtctctttg |
315 |
Q |
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| T |
39334993 |
caacggttaaattaaatattgaaggtagctctcttgataatctagatcgctatggttcaaaggcttaattagatacactaatggtaattaggtctctttg |
39334894 |
T |
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| Q |
316 |
gtagttgt |
323 |
Q |
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| T |
39334893 |
ggagttgt |
39334886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 1963635 - 1963442
Alignment:
| Q |
22 |
cagatgtctgattgttatgaatggattaaatattttgcttatgagaatgatg-----aacaactcttcttgatatcttgctggtttatttgaagaacccg |
116 |
Q |
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| T |
1963635 |
cagatgtttgattgttatgagtggattaaacactttgcttatgagaatgatgggatagacatctcttcttgatattttgctggttcatttggagaactca |
1963536 |
T |
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| Q |
117 |
caataaagagtttatttctcacaactcctaggcagattgaaaagttttgaatctcattaacatgcagcacgaagcaactattaggtgctttggt |
210 |
Q |
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| T |
1963535 |
caattaataacttttttctaacacctcttcgataaattggaaaattttaaatctcattaacacgcagcatgaagctactgttaggtgttttggt |
1963442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 1963382 - 1963298
Alignment:
| Q |
221 |
gttaaattaaatattgaaggtagctctcttgataatctagatcgctat-ggttcaaaggtttaattaaatacactaatggtaatt |
304 |
Q |
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| T |
1963382 |
gttaaattaaatgttgatggtagctctattggtaatccgggttgatatgggttcagaggtttaattagagacactaatggtaatt |
1963298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 11324243 - 11324335
Alignment:
| Q |
16 |
aacttgcagatgtctgattgttatgaatggattaaatattttgcttatgagaatgatgaacaactcttcttgatatcttgctggtttatttga |
108 |
Q |
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| T |
11324243 |
aactttcaaatgtctgattgttacgagtggattaaacattttgcttataacaatgatgggtaactcttcttgatatcttgctggttcatttga |
11324335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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