View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17022_low_2 (Length: 273)
Name: NF17022_low_2
Description: NF17022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17022_low_2 |
 | |
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| [»] chr5 (2 HSPs) |
| |
|
| [»] chr2 (8 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (10 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 32798203 - 32797953
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
32798203 |
aagcatacaatacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcatta |
32798105 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatta |
217 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
32798104 |
cctaagaaccatagatatcattacctaggact--cttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaatta |
32798007 |
T |
|
| Q |
218 |
tgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
32798006 |
tgacagaaaataacaacac--aattaattattaaatcagaaaaatatcaatctcca |
32797953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 32800515 - 32800265
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
32800515 |
aagcatacaatacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcatta |
32800417 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatta |
217 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
32800416 |
cctaagaaccatagatatcattacctaggact--cttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaatta |
32800319 |
T |
|
| Q |
218 |
tgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
32800318 |
tgacagaaaataacaacac--aattaattattaaatcagaaaaatatcaatctcca |
32800265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 45338768 - 45338518
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
45338768 |
aagcatacaatacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcatta |
45338670 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatta |
217 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
45338669 |
cctaagaaccatagatatcattacctaggact--cttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatta |
45338572 |
T |
|
| Q |
218 |
tgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
45338571 |
tgacagaaaataacaacac--aattaattattaaatcagaaaaatatcaatctcca |
45338518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 45336456 - 45336206
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
45336456 |
aagcatacaatacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcatta |
45336358 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatta |
217 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||| ||| || ||||||| |
|
|
| T |
45336357 |
cctaagaaccatagatatcattacctaggact--cttacttaccaaataagcaacaatctaaatatgacacttaaacttacacaagcaacacattaatta |
45336260 |
T |
|
| Q |
218 |
tgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
45336259 |
tgacagaaaataacaacac--aattaattattaaatcagaaaaatatcaatctcca |
45336206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 14662528 - 14662316
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
14662528 |
aagcatacactacaaatatatagagccaagccataaacttgcttgtaaaactgaacataagatctgcacgaaatctactcttaagcactagtcattatta |
14662429 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattaccta-ggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatt |
216 |
Q |
| |
|
|||| |||| ||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| || ||||||| ||| ||||||||| |
|
|
| T |
14662428 |
cctagcaacaatagacatcattacctagggactgttttacttactaaataagcaacgatctaattatgacacttatacataaacaagcaacactttaatt |
14662329 |
T |
|
| Q |
217 |
atgacagaaaaca |
229 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14662328 |
atgacagaaaaca |
14662316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 17649068 - 17648814
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
17649068 |
aagcatacataacaaatatatagagccaagccataagcttgcttgtaagattgaacataaaatatgcactaaatctactc-taaacactagtcatcatta |
17648970 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacct-aggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatt |
216 |
Q |
| |
|
|||||||| | ||| ||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||| | ||||||||||| ||| | ||||| |
|
|
| T |
17648969 |
cctaagaatattagacatcattacctaaggactattttacatacttaataagcaacaatctaattatgaca--ttaacttaaacaagcaacaagctaatt |
17648872 |
T |
|
| Q |
217 |
atgacag-aaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
||||||| ||||||||| |||| || |||||| |||||||||||||||||||||||| |
|
|
| T |
17648871 |
atgacagaaaaacagcagcacacaagtaattaacaaaacagaaaaatatcaatctcca |
17648814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 132863 - 132783
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactct |
98 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||| ||||||||| || || ||||||||| |||||||||||| |
|
|
| T |
132863 |
aagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaatcaaatctgcaataaatctactct |
132783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 1454124 - 1454025
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaa-tctgcactaaatctactcttaagcactaatcatcatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| | | || |||||| |||||| |||||||| | |||| ||||| |||||||| |
|
|
| T |
1454124 |
aagcatacactacaaatatatagagccaagccataagctttcttgtaaaattgaaaataaaactctgcagtaaatcta-ttttaaacactagtcatcatt |
1454026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 273
Target Start/End: Complemental strand, 132781 - 132632
Alignment:
| Q |
124 |
aacactaggcatcattacctag-gactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgaca |
222 |
Q |
| |
|
|||||||| ||||||||| ||| |||| ||||||||| |||||||||| | | |||||||||||||||| |||||| ||| | | ||||| | ||| |
|
|
| T |
132781 |
aacactagccatcattacttagtgactactttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttaca |
132682 |
T |
|
| Q |
223 |
gaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||| |||| || | || |||||| |||||||||||||| |||||||||| |
|
|
| T |
132681 |
gaaataagcagca-aaaaataattaataaaacagaaaaatctcaatctcca |
132632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 1454041 - 1453989
Alignment:
| Q |
124 |
aacactaggcatcattacctagg-actgctttacttactaaataagcaacaat |
175 |
Q |
| |
|
|||||||| |||||||| ||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
1454041 |
aacactagtcatcattatctagggacttctttacttactaaacaagcaacaat |
1453989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 44734349 - 44734099
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
44734349 |
aagcatacactacaaatatatagagtcaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcatta |
44734251 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatta |
217 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
44734250 |
cctaagaaccatagacatcattacctaggact--cttacttaccaaataagcaacaacctaactatgacacttaaacttaaacaagcaacacattaatta |
44734153 |
T |
|
| Q |
218 |
tgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||||||| | |||||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
44734152 |
tgacagaaaataacaacac--aattaatttttaaatcagaaaaatatcaatctcca |
44734099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 44732038 - 44731788
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| | |
|
|
| T |
44732038 |
aagcatacactacaaatatatagagtcaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcatca |
44731940 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatta |
217 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
44731939 |
cctaagaaccatatacatcattacctaggact--cttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatta |
44731842 |
T |
|
| Q |
218 |
tgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||||||| | |||||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
44731841 |
tgacagaaaataacaacac--aattaatttttaaatcagaaaaatatcaatctcca |
44731788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 48023947 - 48024202
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48023947 |
aagcatacactacaaatatatagagtcaagccataagcttgcttgtaagactgaacataaaatctgcactaaatctactcttaagcactagtcatcatta |
48024046 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacc-taggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatt |
216 |
Q |
| |
|
|||||| || ||| |||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| || ||||||||| |
|
|
| T |
48024047 |
cctaagttcattagacatcattaccttgggactgttttacttactaaataagcaacaatctaattatgacacttatacataaacaagtaacactttaatt |
48024146 |
T |
|
| Q |
217 |
atgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||||||||||||| | | || |||||| |||| ||||||||||||||||||| |
|
|
| T |
48024147 |
atgacagaaaacagcagtaga-aaataattaacaaaagagaaaaatatcaatctcca |
48024202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 28784710 - 28784460
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
28784710 |
aagcatacactacaaatatatagaatcaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcatta |
28784612 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatta |
217 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||||| ||| || ||||||| |
|
|
| T |
28784611 |
cctaagaaccatagacatcattacctaggact--cttacttaccaaataagcaacaatctaactataacacttaaacttaaacaagcaacacattaatta |
28784514 |
T |
|
| Q |
218 |
tgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
||| |||||| | |||||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
28784513 |
tgagagaaaataacaacac--aattaatttttaaatcagaaaaatatcaatctcca |
28784460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 48707642 - 48707898
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
48707642 |
aagcatacactacaaatatatagagtcaagccataagcttgcttgtaagactaaacataaaatctacactaaatctact-ttaaacactagtcatcatta |
48707740 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgac------acttaaacttaaacaaacaatactt |
211 |
Q |
| |
|
||||| ||| ||| ||||||||||||||||| |||||||| |||||| ||||||||||| |||||| |||||||||||||||| ||| || | |
|
|
| T |
48707741 |
cctaaaaaccatagacatcattacctaggact--cttacttaccaaataaacaacaatctaactatgacacttaaacttaaacttaaacaagcaacacat |
48707838 |
T |
|
| Q |
212 |
taattatgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
48707839 |
taattatgacagaaaataacaacac--aattaattattaaatcagaaaaatatcaatctcca |
48707898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 55 - 273
Target Start/End: Original strand, 48025095 - 48025313
Alignment:
| Q |
55 |
cttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaacactaggcatcattacctagg-actgctt |
153 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| || || | || || |
|
|
| T |
48025095 |
cttgcttgtaagaaggaacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattaacttgggattgttt |
48025194 |
T |
|
| Q |
154 |
tacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaacagcaacacataattaattattaaaa |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| || ||||||| ||| ||||||||||||||||||||||||| | | || |||||| |||| |
|
|
| T |
48025195 |
tacttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtaga-aaataattaacaaaa |
48025293 |
T |
|
| Q |
254 |
cagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
48025294 |
cagaaaaatatcaatctcca |
48025313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 71 - 273
Target Start/End: Original strand, 48027291 - 48027493
Alignment:
| Q |
71 |
aacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaacactaggcatcattaccta-ggactgctttacttactaaataagc |
169 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
48027291 |
aacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattacctagggactgttttacttactaaataagc |
48027390 |
T |
|
| Q |
170 |
aacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatc |
269 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| ||| |||| ||||||| |||||||| ||| | | || |||||| |||||||||||||||||||| |
|
|
| T |
48027391 |
aacaatctaattatgacacttatacataaacaagcaacacttaaattatggcagaaaacggcagta-aaaaataattaacaaaacagaaaaatatcaatc |
48027489 |
T |
|
| Q |
270 |
tcca |
273 |
Q |
| |
|
|||| |
|
|
| T |
48027490 |
tcca |
48027493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 55 - 273
Target Start/End: Original strand, 48024535 - 48024753
Alignment:
| Q |
55 |
cttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacctaagaacactaggcatcattacctagg-actgctt |
153 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| || ||||||||||| || |||| || |
|
|
| T |
48024535 |
cttgcttgtaagaaggaacataaaatctacactaaatctactattaagcactagtcatcattacctaagaacaataaacatcattaccttgggactgttt |
48024634 |
T |
|
| Q |
154 |
tacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatgacagaaaacagcaacacataattaattattaaaa |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||| ||| | ||||||||||||||||||||||| | | || |||||| |||| |
|
|
| T |
48024635 |
tacttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaacagcagtaga-aaataattaacaaaa |
48024733 |
T |
|
| Q |
254 |
cagaaaaatatcaatctcca |
273 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
48024734 |
cataaaaatatcaatctcca |
48024753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 5354559 - 5354688
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |||| |
|
|
| T |
5354559 |
aagcatacactacaaatatatagagccaagccataagcttacttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcattatta |
5354657 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacctaggac |
148 |
Q |
| |
|
||||||||| || |||||||||||||||| |
|
|
| T |
5354658 |
cctaagaaccataaacatcattacctaggac |
5354688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 5913558 - 5913489
Alignment:
| Q |
29 |
acaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactct |
98 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
5913558 |
acaaatatatagagtcaaaccataagcttgcttgtaagattgaacataaaatctgcattaaatctactct |
5913489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 5907850 - 5907771
Alignment:
| Q |
109 |
tcatcattacctaagaacactaggcatcattacctag-gactgctttacttactaaataagcaacaatctaattatgaca |
187 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||||| |||| || |||| |||||||||||||||||||||||||||| |
|
|
| T |
5907850 |
tcatcattacctaagaaccgtatacattattacctagagactttttcacttgctaaataagcaacaatctaattatgaca |
5907771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 5907781 - 5907721
Alignment:
| Q |
212 |
taattatgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||||||||||||| ||| ||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
5907781 |
taattatgacagaaaattacaa-acacaagtaattattaaaccagaaaaatatcaatctcca |
5907721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 1550353 - 1550103
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
1550353 |
aagcatacattacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcatcatta |
1550255 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatta |
217 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||| ||| || ||||||| |
|
|
| T |
1550254 |
cctaagaaccatagatatcattacctaggact--cttacttaccaaataagcaacaatctaactatgacacttaaacttatacaagcaacacattaatta |
1550157 |
T |
|
| Q |
218 |
tgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
||||| |||| | |||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
1550156 |
tgacataaaataacaacac--aattaattattaaatcagaaaaatatcaatctcca |
1550103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 9535449 - 9535202
Alignment:
| Q |
21 |
catacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacct |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
9535449 |
catacactacaaatatatagagtcaagccataaacttgcttgtaagactaaacataaaatctacactaaatctactc-taaacactagtcatcattacct |
9535351 |
T |
|
| Q |
121 |
aagaacactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatga |
220 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |||||| ||| |
|
|
| T |
9535350 |
aagaaccatagaaatcattacctaggact--cttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattttga |
9535253 |
T |
|
| Q |
221 |
cagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
||||||| | |||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
9535252 |
cagaaaataacaacac--aattaattattaaaccagaaaaatatcaatctcca |
9535202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 22804805 - 22804556
Alignment:
| Q |
21 |
catacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcattacct |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||| |
|
|
| T |
22804805 |
catacactacaaatatatagagccaagccataagtctgtttgtaagactaaacataaaatctgcattaaatctactctaaa-cactagtcatcattacct |
22804707 |
T |
|
| Q |
121 |
aagaacactaggcatcattacctaggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaattatga |
220 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| | |||||||||| |
|
|
| T |
22804706 |
aagaaccatagacatcattacctaggactcttttacttaccaaataagcagcaatctaattatggcacttaaacttaaacaagcaacgcattaattatga |
22804607 |
T |
|
| Q |
221 |
cagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||| | |||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
22804606 |
gagaaaataacaacac--aattaattattaaaccagaaaaatatcaatctcca |
22804556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 7230911 - 7231118
Alignment:
| Q |
17 |
aaagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatt |
116 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| ||| |||| |||| | ||||||||||||||||||||||| ||| ||| ||||| |||||||| |
|
|
| T |
7230911 |
aaagcatacataacaaa-atatagagccaagccataaactttcttggaagattgaacataaaatctgcactaaatctgctc-taaacactagtcatcatt |
7231008 |
T |
|
| Q |
117 |
acctaagaacactaggcatcattaccta-ggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaat |
215 |
Q |
| |
|
||||| |||| ||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| | | |||| |
|
|
| T |
7231009 |
acctaggaaccatagacatcattacctacggactactttacttactaaataagcagcaatctaattatgacact--aacttaaacaagcaacaatctaat |
7231106 |
T |
|
| Q |
216 |
tatgacagaaaa |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7231107 |
tatgacagaaaa |
7231118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 273
Target Start/End: Complemental strand, 44640196 - 44640118
Alignment:
| Q |
195 |
ttaaacaaacaatactttaattatgacagaaaa-cagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
||||| |||||| | | |||||||||||||||| || ||||||| ||| | |||||||| |||||||||||||||||||| |
|
|
| T |
44640196 |
ttaaataaacaaaaatctaattatgacagaaaaacaacaacaca-aatcatttattaaaccagaaaaatatcaatctcca |
44640118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 44640224 - 44640169
Alignment:
| Q |
133 |
catcattacctag-gactgctttacttactaaataagcaacaatctaattatgaca |
187 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
44640224 |
catcattacctagtgactactttacttattaaataaacaaaaatctaattatgaca |
44640169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 13111063 - 13111318
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||| | ||||||||||| |||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13111063 |
aagcataaaatacaaatatattgagccaagccataagcttgcttgtaagagtgagcataaaatttgcactaaatctactcttaagcactagtcatcatta |
13111162 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattaccta-ggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatt |
216 |
Q |
| |
|
|||||||||| ||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||| ||| ||||||||| |
|
|
| T |
13111163 |
cctaagaacaatagacattattacctagggactattttacttactaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaatt |
13111262 |
T |
|
| Q |
217 |
atgacagaaaacagcaacacataattaattattaaaacagaaaaatatcaatctcca |
273 |
Q |
| |
|
|||||||||||||||| | | || |||||| |||||||||||||||||||||||| |
|
|
| T |
13111263 |
atgacagaaaacagcagta-aaaagtaattaacaaaacagaaaaatatcaatctcca |
13111318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 13108770 - 13108982
Alignment:
| Q |
18 |
aagcatacactacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactcttaagcactaatcatcatta |
117 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| |||||||||||||| || ||||||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
13108770 |
aagcatacactacaaatatatggagtcaagccataagtttgcttgtaagactgaatataaaatatgttctaaatctactcttaagcactagtcatcatta |
13108869 |
T |
|
| Q |
118 |
cctaagaacactaggcatcattaccta-ggactgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatt |
216 |
Q |
| |
|
|| ||||||| || | ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||| |
|
|
| T |
13108870 |
cccaagaacaatatgtatcattacctagggactgttttacttactaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaatt |
13108969 |
T |
|
| Q |
217 |
atgacagaaaaca |
229 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13108970 |
atgacagaaaaca |
13108982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 6723659 - 6723449
Alignment:
| Q |
21 |
catacactacaaatatatagagccaagccataagcttgcttgtaagactaaacata--aaatctgcactaaatctactcttaagcactaatcatcattac |
118 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||| |||||||||| |||||| |||| || | |||||||||||| || ||| | |||||||||| |
|
|
| T |
6723659 |
catacactataaatatatagagccaagtcataagtttgtttgtaagactcaacatataaaatttgtattaaatctactctaaa-cacgagtcatcattac |
6723561 |
T |
|
| Q |
119 |
ctaagaacactaggcatcattacctagg-actgctttacttactaaataagcaacaatctaattatgacacttaaacttaaacaaacaatactttaatta |
217 |
Q |
| |
|
||||||||| || ||| || ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
6723560 |
ctaagaacaataaacattatcacctagggactgttttacttactaaataagcaacaatctaattatgacacttacacttaaacaagcaacactttaatta |
6723461 |
T |
|
| Q |
218 |
tgacagaaaaca |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6723460 |
tgacagaaaaca |
6723449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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