View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17022_low_3 (Length: 250)
Name: NF17022_low_3
Description: NF17022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17022_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 27774859 - 27775084
Alignment:
| Q |
15 |
atataaaaatcaatgtaaggaaaaatatcttagagtagatgcaaatgttataatttgtagtaaaaaacaacaatagcatgtctgtttgatataattgaaa |
114 |
Q |
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| T |
27774859 |
atataaaaatcaatgtaaggaaaaatatcttagagtagatgcaaatgttatcatttgtagtaaaaaacaacaatagcatgtctgtttgatataattgaaa |
27774958 |
T |
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| Q |
115 |
acaaagaagataaacaacagccgtagttatcctggtggttggaaaataaagatgtattctaaatttaacatgtcaaaagataaaaatgtaaaagataaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774959 |
acaaagaagataaacaacagccgtagttatcctggtggttggaaaataaagatgtattctaaatttaacatgtcaaaagataaaaatgtaaaagataaat |
27775058 |
T |
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| Q |
215 |
gatgtctgataagcaaacacaggttc |
240 |
Q |
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|||||||||||||||||||||||||| |
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| T |
27775059 |
gatgtctgataagcaaacacaggttc |
27775084 |
T |
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