View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17022_low_4 (Length: 213)
Name: NF17022_low_4
Description: NF17022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17022_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 34243464 - 34243653
Alignment:
| Q |
13 |
agaaaaatcctacatacacatacgtacatgagaataattatcaaccatttgattaaaagttaatggctgagatttaaatgcaccattaaaataccacgtg |
112 |
Q |
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| T |
34243464 |
agaaaaatcctacatacacatacgtacatgagaataactatcaaccatttgattaaaagttaatggctgagatttaaatgctccattaaaataccacgtg |
34243563 |
T |
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| Q |
113 |
cannnnnnnnnnnnnnnnnnttcttcgagcaaacgaattcacccaaaatcgcccatcagtgctatataattaaggtgttcaatgatgatgtcc |
205 |
Q |
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| T |
34243564 |
ca---cctctcctcctcctcttcttcgagcaaacgaattcacccaaaatcgcccatcagtgctatataattaaggtgttcaatgatgttgtcc |
34243653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 11434596 - 11434659
Alignment:
| Q |
40 |
atgagaataattatcaaccatttgattaaaagttaatggctgagatttaaatgcaccattaaaa |
103 |
Q |
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| T |
11434596 |
atgagaataatcatcaactatttgattaaaagctaatggttgagatttaaatgctcaattaaaa |
11434659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 11436473 - 11436425
Alignment:
| Q |
45 |
aataattatcaaccatttgattaaaagttaatggctgagatttaaatgc |
93 |
Q |
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| T |
11436473 |
aataattatcaaccatttgattaaaagctaacggttgagatttaaatgc |
11436425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 4181066 - 4180993
Alignment:
| Q |
41 |
tgagaataattatcaaccatttgattaaaagttaatggctgagatttaaatgcaccattaaaataccacgtgca |
114 |
Q |
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| T |
4181066 |
tgagaataattatcaaccatttgattaaaagtttatggctgagatttaaatgctcacttaatataccacatgca |
4180993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 24252353 - 24252293
Alignment:
| Q |
49 |
attatcaaccatttgattaaaagttaatggctgagatttaaatgcaccattaaaataccac |
109 |
Q |
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| T |
24252353 |
attatcaaccatttgattaaaagttaatggctgagatttaaatggtcaattaaaataccac |
24252293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 39738873 - 39738811
Alignment:
| Q |
41 |
tgagaataattatcaaccatttgattaaaagttaatggctgagatttaaatgcaccattaaaa |
103 |
Q |
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| T |
39738873 |
tgagaataatcatcaaccatttaattaaaagctaatggttgagatttaaatgctcaattaaaa |
39738811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 50464331 - 50464282
Alignment:
| Q |
41 |
tgagaataattatcaaccatttgattaaaagttaatggctgagatttaaa |
90 |
Q |
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| T |
50464331 |
tgagaataattatcaaccattagattacaaataaatggttgagatttaaa |
50464282 |
T |
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