View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17023_high_2 (Length: 212)
Name: NF17023_high_2
Description: NF17023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17023_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 47408089 - 47408286
Alignment:
| Q |
1 |
atctgcaagaaaaacaatggttcttagcataacgttgaaatctatattcaatcgccttnnnnnnnnncatctgtaaggctacataaaccacatactctac |
100 |
Q |
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| T |
47408089 |
atctgcaagaaaaacaatggttcttagcataacgttgaaatctatattcaatcgccttaaaaaaaa-catctgtaaggctgcataaaccacatactctac |
47408187 |
T |
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| Q |
101 |
ctacctgttgttgcacttctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttcatctc |
199 |
Q |
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| T |
47408188 |
ctacctgttgctgcacttctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttcatctc |
47408286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 47391053 - 47391152
Alignment:
| Q |
100 |
cctacctgttgttgcacttctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttcatctc |
199 |
Q |
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||||||||||||||||||| |||||||||| |||||| |||||||||| ||||||||||||||| ||||| |||| | || ||||| | ||||||||||| |
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| T |
47391053 |
cctacctgttgttgcacttttgttaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttaggtatttcatctc |
47391152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 47419412 - 47419515
Alignment:
| Q |
96 |
tctacctacctgttgttgcacttctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttca |
195 |
Q |
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||||||||||||||||||||||| || ||||||| |||||| |||||||||| ||||||||||||||| ||||| |||| | || ||||||| |||||| |
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| T |
47419412 |
tctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggcatttca |
47419511 |
T |
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| Q |
196 |
tctc |
199 |
Q |
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|||| |
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| T |
47419512 |
tctc |
47419515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 47421884 - 47421987
Alignment:
| Q |
96 |
tctacctacctgttgttgcacttctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttca |
195 |
Q |
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||||||||||||||||||||||| || ||||||| |||||| |||| ||||| ||||||||||||||| ||||| |||| | || ||||| | ||||||| |
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| T |
47421884 |
tctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttca |
47421983 |
T |
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| Q |
196 |
tctc |
199 |
Q |
| |
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|||| |
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| T |
47421984 |
tctc |
47421987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 47390976 - 47391019
Alignment:
| Q |
2 |
tctgcaagaaaaacaatggttcttagcataacgttgaaatctat |
45 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
47390976 |
tctgcaataaaaaggatggttcttagcataacgttgaaatctat |
47391019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 47421796 - 47421834
Alignment:
| Q |
7 |
aagaaaaacaatggttcttagcataacgttgaaatctat |
45 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
47421796 |
aagaaaaaggatggttcttagcataacgttgaaatctat |
47421834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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