View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17023_low_1 (Length: 380)
Name: NF17023_low_1
Description: NF17023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17023_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 4996418 - 4996055
Alignment:
| Q |
20 |
agcattattacttccagaagaagaatcattcttggggataggataaggttaagaaatttggacaacctatgaaatttgtatagtactagagagagatgtg |
119 |
Q |
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| T |
4996418 |
agcattattacttccagaagaagaatcattcttggggataggataaggttaagaaatttggacaacctatgaaatttgtatagtactagagagagatgtg |
4996319 |
T |
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| Q |
120 |
aaacattttggagatgatttgatgaacatgttgactatgttattgtctctttgtttgtgatttttgtaatag-------------gtggctacagtaaga |
206 |
Q |
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| T |
4996318 |
aaacattttggagatgatttgatgaacatgttgactatgttattgtctctttgtttgtgatttttgtaatagagctatagtataggtggctacagtaaga |
4996219 |
T |
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| Q |
207 |
atattttgcttaggagaataaggaatggtgcattctaaagaaaggaaaatgacatttaatttatgtactctaatctatttcaatttccaaccactaatgc |
306 |
Q |
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| T |
4996218 |
atattttgcttaggagaataaggaatggtgcattctaaagaaaggaaaatgacatttaatttatgtactctaatctatttcaatttccaaccactaatgc |
4996119 |
T |
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| Q |
307 |
agcatggtagattttgaaagaaaagaaacaaaagttaatggttggaaagattctgttccctttg |
370 |
Q |
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| T |
4996118 |
agcatggtagattttgaaagaaaagaaacaaaagttaatggttggaaagaatctgttccctttg |
4996055 |
T |
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