View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17023_low_2 (Length: 321)
Name: NF17023_low_2
Description: NF17023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17023_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 7078209 - 7077903
Alignment:
| Q |
14 |
agaggtggaagatattgtaaatgcgattaaatcaacctctttgatgtaatttctcgttagnnnnnnnngggtcttgtatatatttttaatggcttccaaa |
113 |
Q |
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| T |
7078209 |
agaggtggaagatattgtaaatgcgattaaatcaacctcttggatttaatttctcattagaaaaaaa-gggtcttgtatatatttttaatggcttccaaa |
7078111 |
T |
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| Q |
114 |
cccttttcttcatcataattcttgatttagggtgtttattttggtgggtcgaataccggacgattgtttgaattgatgatgaatatgaaagatattgtaa |
213 |
Q |
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| T |
7078110 |
cccttttcttcatcataattcttgatttagggtgtttgttttggtgggtcgaataccagacgattgtatgaattgatgatgaatatgaaagatattgtaa |
7078011 |
T |
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| Q |
214 |
atgcaattaaattaacctcttggatgtgaattctcgttagaaaaaagagtgtcttgtatattttttaaatggtttccaaaccctcttcttcatcataatt |
313 |
Q |
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| T |
7078010 |
atgcaatcaaattaacctcttggatgtgaattctcgttagaaaaaagagtgtcttgtatattttttaaatggtttccaaaccctcttcttcatcataatt |
7077911 |
T |
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| Q |
314 |
cttgattt |
321 |
Q |
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| T |
7077910 |
tttgattt |
7077903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 7078022 - 7077882
Alignment:
| Q |
22 |
aagatattgtaaatgcgattaaatcaacctctttgatgtaatttctcgttagnnnnnnnngggtcttgtatatatttttaatggcttccaaacccttttc |
121 |
Q |
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| T |
7078022 |
aagatattgtaaatgcaatcaaattaacctcttggatgtgaattctcgttagaaaaaagagtgtcttgtatattttttaaatggtttccaaaccctcttc |
7077923 |
T |
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| Q |
122 |
ttcatcataattcttgatttagggtgtttattttggtgggt |
162 |
Q |
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| T |
7077922 |
ttcatcataatttttgatttagggtgtttgtttttgtgggt |
7077882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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