View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17023_low_5 (Length: 275)
Name: NF17023_low_5
Description: NF17023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17023_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 47419500 - 47419246
Alignment:
| Q |
1 |
aagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatgtttt |
100 |
Q |
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| T |
47419500 |
aagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatgtttt |
47419401 |
T |
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| Q |
101 |
ttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttcttctggtggacagcagccc |
200 |
Q |
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| T |
47419400 |
ttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttcttctggtggacagcagccc |
47419301 |
T |
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| Q |
201 |
cctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatg |
255 |
Q |
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| T |
47419300 |
cctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatg |
47419246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 47391137 - 47390890
Alignment:
| Q |
1 |
aagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatgtttt |
100 |
Q |
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| T |
47391137 |
aagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggtaggcagaatagatgattt |
47391038 |
T |
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| Q |
101 |
ttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttcttctggtggacagcagccc |
200 |
Q |
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| T |
47391037 |
ttcctaaggtggttagagatagatttcaacgttatgctaagaaccatcctttttattgcagacaaaaaccaatacaggttcttc---tggacagcagccc |
47390941 |
T |
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| Q |
201 |
cctgtaaggatttctactgttacttccagtggaacaaaatttaatgatccc |
251 |
Q |
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| T |
47390940 |
cctgtaaggatgccaactgttacttccagtggaacaaaatttaacgatccc |
47390890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 47421972 - 47421705
Alignment:
| Q |
1 |
aagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagat----- |
95 |
Q |
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| T |
47421972 |
aagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatagttt |
47421873 |
T |
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| Q |
96 |
---------------gttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggtt |
180 |
Q |
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| T |
47421872 |
actttatcttacaatgtgttttcttaaggtggttaaagatagatttcaacgttatgctaagaaccatcctttttctt----acaaaaaccaatacaggtt |
47421777 |
T |
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| Q |
181 |
cttctggtggacagcagccccctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatg |
255 |
Q |
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| T |
47421776 |
cttctgg---acagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaatggtcctgatg |
47421705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 47408261 - 47408183
Alignment:
| Q |
11 |
tgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtaga |
89 |
Q |
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| T |
47408261 |
tgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcagcaacaggtaggtaga |
47408183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 47424696 - 47424609
Alignment:
| Q |
9 |
tttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatg |
96 |
Q |
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| T |
47424696 |
tttgtacggcttatgaaaggcattgtggggaagcagatgcttatatcaacattaacagaagtgcaccaacaggtacgtagattagatg |
47424609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 47408133 - 47408065
Alignment:
| Q |
119 |
ataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttcttctgg |
187 |
Q |
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| T |
47408133 |
atagatttcaacgttatgctaagaaccattgtttttcttgcagataaaatccaatacgggttcttctgg |
47408065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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