View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17024_high_1 (Length: 692)
Name: NF17024_high_1
Description: NF17024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17024_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 18 - 676
Target Start/End: Original strand, 3766226 - 3766884
Alignment:
| Q |
18 |
cgaacgatgagacattgaagtctaattatattcaatcgggttaaattttgtgtaaaagatagaaaaaacgaagcagtgaaccaaataacaaattcaaccc |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3766226 |
cgaacgatgagacattgaagtttaattatattcaatcgggttaaattttgtgtaaaagatagaaaaaacgaagcagtgaaccaaataacaaattcaaccc |
3766325 |
T |
|
| Q |
118 |
ggttcgatccggttctaacaaacacgtactagtaaaagatttgaggtagatctattcttacatttgaagacctgttttatggtgttgtgtatagaggtga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3766326 |
ggttcgatccggttctaacaaacacgtactagtaaaagatttgaggtagatctattcttacatttgaagacctgttttatggtgttgtgtatagaggtga |
3766425 |
T |
|
| Q |
218 |
agacctctttgtgtgaaaagattcctgctggtccagcctatatgaaaacatacaaaaaggaaaatgtgaaaagttagatattgattaaatggacagtgag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
3766426 |
agacctctttgtgtgaaaagattcctgctggtccagcctatatgaaaacatacaaaaaggaaaatgtgaaaagttaaatattgattaaatgggcagtgag |
3766525 |
T |
|
| Q |
318 |
aaatacttcgtaacaaaaatatggttgtttaatagattctttaaaattgctcacttgactagaaaaagaaaaccaatcgagagttacaactcaatcggat |
417 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3766526 |
aaatacttcgtaacaaaaatatggttgttcaatagattatttaaaattgctcacttgactggaaaaagaaaaccaatcgagagttacaactcaatcggat |
3766625 |
T |
|
| Q |
418 |
tttacacaaaaacagtcgatcaggagttgcgatctactcgagagcgaaattcaggatcttattgaacaactgtctaacataaaagtgtgttcttcaaaag |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3766626 |
tttacacaaaaacagtcgatcaggagttgcgatctactcgagagcgaaattcaggagcttattgaacaactgtctaacataaaagtgtgttcttcaaaag |
3766725 |
T |
|
| Q |
518 |
tatacctgggtcacaaaaatgccattctcagtaagtttaggcttcacaactttctcatagaaggacttagtgtagagctgatagcaaggaccatcttcaa |
617 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3766726 |
tatacctgggtcacaaaaatgccattctcagtgagtttaggcttcacaactttctcatagaaggacttagtgtagagctgatagcaaggaccatcttcaa |
3766825 |
T |
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| Q |
618 |
gtgggtcagccaaatctccaacaatgatatcaaacttctcctttcttttctctaattca |
676 |
Q |
| |
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| T |
3766826 |
gtgggtcagccaaatctccaacaatgatatcaaacttctcctttcttttctctaattca |
3766884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 518 - 672
Target Start/End: Original strand, 48389249 - 48389403
Alignment:
| Q |
518 |
tatacctgggtcacaaaaatgccattctcagtaagtttaggcttcacaactttctcatagaaggacttagtgtagagctgatagcaaggaccatcttcaa |
617 |
Q |
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|||||||| |||||||||||| |||||||| | || || || |||| || || |||||||| || || || || || ||||| ||||| ||| |||||| |
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| T |
48389249 |
tatacctgagtcacaaaaatgtcattctcattgagcttgggtttcagaatattttcatagaacgattttgtataaagttgataacaaggtccaccttcaa |
48389348 |
T |
|
| Q |
618 |
gtgggtcagccaaatctccaacaatgatatcaaacttctcctttcttttctctaa |
672 |
Q |
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|||||| |||||||||||||||||||||||||| ||||| || ||||||||||| |
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| T |
48389349 |
ctgggtctgccaaatctccaacaatgatatcaaatttctctttccttttctctaa |
48389403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 48388621 - 48388707
Alignment:
| Q |
170 |
tattcttacatttgaagacctgttttatggtgttgtgtatagaggtgaagacctctttgtgtgaaaagattcctgctggtccagcct |
256 |
Q |
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||||||||||||| ||||| ||||| || ||||||| |||||| |||||||| || |||||| ||||| ||||| |||||||||| |
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| T |
48388621 |
tattcttacatttaaagacttgtttgattgtgttgtatatagaagtgaagacttccctgtgtgtcaagatacctgccggtccagcct |
48388707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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