View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17024_low_1 (Length: 924)
Name: NF17024_low_1
Description: NF17024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17024_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 656; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 14 - 713
Target Start/End: Complemental strand, 4775653 - 4774954
Alignment:
| Q |
14 |
aagaagagagagtggagggaaagaatgtgagagtgatagtgtgatatatatagcatttgggaagggaacaaatggtccaacattatacacaaaacaccga |
113 |
Q |
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| T |
4775653 |
aagaagagagagtggagggaaagaatgtgagagtgatagtgtgatatatatagcatttgggaagggaacaaatggtccaacattatacacaaaacaccga |
4775554 |
T |
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| Q |
114 |
aagttttagaattaagattgcttgtcccaagaggacccaaaattccaaagcaaatggcccaccattttcagtgttcacacctaaaaagttcaaatttacc |
213 |
Q |
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| T |
4775553 |
aagttttagaattaagattgcttgtcccaagaggacccaaaattccaaagcaaatggcccaccattttcagtgttcacacccaaaaagttcaaatttacc |
4775454 |
T |
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| Q |
214 |
tctaaataatttgtgaccgttgtttgttactttcttgttccaagaggcatggattatttccactgcacctatgagttgaacaaacaaacaaacaatggat |
313 |
Q |
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| T |
4775453 |
tctaaataatttgtgaccgttgtttgttactttcttgttccaagaggcatggattatttccactgcacctatgagttgaacaaacaaacaaacaatggat |
4775354 |
T |
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| Q |
314 |
tcaacaactcagaatgatcgcgtgttcacgattttcgtctctttattttaaatatacgagttttgataatgtggctaattaaatacttgacaacttagtc |
413 |
Q |
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| T |
4775353 |
tcaacaactcacaatgatcgcgtgttcacgattttcgtctctttattttaaatatacgagttttgatgatgtggctaattaaatacttgacaatttagtc |
4775254 |
T |
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| Q |
414 |
gatagcatgaaaataaattgttaagtgaaaagtaacctagtgtattgcatcaaatttggtcgcctttgtaatatatattttgataattcaattacatata |
513 |
Q |
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| T |
4775253 |
gataacatgaaaataaattgttaagtgaaaagtaacctagtgtattgcatcaaatttggtcgcttttgtaatatatattttgataattcaattacatata |
4775154 |
T |
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| Q |
514 |
aataattagttaagtgggaattcccctaaacaatatcacatcatcaacatggttgtcactttagtcaaattcgaacattgataatgttattgattcttta |
613 |
Q |
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| T |
4775153 |
aataattagttaagtgggaattcccctaaacaatatcacatcatcaacatggttgtcacttgagtcaaatttgaacatcgataatgttattgattcttta |
4775054 |
T |
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| Q |
614 |
ttagctttatacatagaacatctcaagtactcatttaccatatttgtcaatcgatattagttctaatgaaattttttctctaccttgctctcaagcttga |
713 |
Q |
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| T |
4775053 |
ttagctttatatatacaacatctcaagtactcatttaccatatttgtcaatcgatattagttctaatgaaattttttctctaccttgctctcaagcttga |
4774954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 772 - 908
Target Start/End: Complemental strand, 4774921 - 4774785
Alignment:
| Q |
772 |
ttgtggaatatgggattccttgtaactgccattaccctcaaagttttttacatgtcatcctgagtcagattgaacactttaccttaattttttattcagg |
871 |
Q |
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| T |
4774921 |
ttgtggaatatgggattccttgtaactgccattaccctcaaagttttttacatgtcatcctgagtcagattgaacactttaccttaattttttattcagg |
4774822 |
T |
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| Q |
872 |
tgattgtgtcatcaagtaggtccaaccttcacaaagg |
908 |
Q |
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| T |
4774821 |
tgattgtgtcatcaagtaggtccaaccttcacaaagg |
4774785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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