View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_high_1 (Length: 1092)
Name: NF17025_high_1
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 433 - 1077
Target Start/End: Original strand, 8172670 - 8173344
Alignment:
| Q |
433 |
tatatatatatcagcatagcaaggtaacacaacaaagcgtggtggctgcaatcctattattatgttttgcaatggctgaaaaacaaaataacatgctgaa |
532 |
Q |
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| T |
8172670 |
tatatatatatcagcatagcaaggtaacataacaaagcgtggtggctgcaatcatattattatcttttgcaatggccgaaaaacaaaataacatgctgaa |
8172769 |
T |
|
| Q |
533 |
caagaactatggtgtgaatcaagatgatgcatctctagtgtcttgagtttatctcaaaagatttgcatcaaagacatattcgtaatgagttgtc---ttt |
629 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
8172770 |
caagaactatggtgtgaatcaagatgatgcatctctagtgtct-gagtttatctcaaaagatttgcatcaaagacatattcgtaatgagtcgtcgtcttt |
8172868 |
T |
|
| Q |
630 |
atcagaagtgttgcaaaaggtatagcctat---------------ttattacgtcttcttaagaatgaaaaagtgttagatatacttgacaaaaaatgga |
714 |
Q |
| |
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||||||| | |||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8172869 |
atcagaaat--tgcataaggtacagcctatattcgtttagccaatttattacgtcctcttaagaatgaaaaagtgttagatatacttgacaaaaaatgga |
8172966 |
T |
|
| Q |
715 |
actctgagggaatctatatagtgaatgatctacgtcaattatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacaca |
814 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8172967 |
actctgagggaatctatatagtgaatgatctacgtcaattatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatc-tacaca |
8173065 |
T |
|
| Q |
815 |
atgatgttaattccttggctaagttggaagattatgaaaatcaattgtgtaatgaacatatgtttctgaatgggaaggtgatatattggtcttgccagtt |
914 |
Q |
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| T |
8173066 |
atgatgttaattccttggctaagttggaagattatgttaatcaattgtgtaatgaacatatgtttctgaatgggaaggtgatatattggtcttgccagtt |
8173165 |
T |
|
| Q |
915 |
gaaatattcagaggctgaacttgttggaatctcgaatcgtctccccatggatgaagaaaatcttc----------------gaatataagtcaaacaatg |
998 |
Q |
| |
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| T |
8173166 |
gaaatattcagaggctgaacttgttggaatctcgaatcgtctccccatggatgaagaaaatcgtcgaatattggaaattaagaatataagtcaaacaatg |
8173265 |
T |
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| Q |
999 |
gaaaccttcttacaacaacgtgaagctaaacaaacagagattgaacaagtttttatgaagaagatggatgtgttaaagg |
1077 |
Q |
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| T |
8173266 |
gaaaccttcttacaacaacgtgaagctaaacaaacagagattgaacaagtttttatgaagaagatggatgtgttaaagg |
8173344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 8169781 - 8170003
Alignment:
| Q |
9 |
gacatcatcagaacaggattggtcgattggaatattttcaattgaagaaggaatgaaaaggatataaagaaagggaatggactgacaatgacaatgggta |
108 |
Q |
| |
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| T |
8169781 |
gacatcaacagaacatgattggtcgattggaatattttcaactgaagaaggaatgaaaaggatataaagaaagggaatggactgacaatgacaatgggta |
8169880 |
T |
|
| Q |
109 |
tatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttcatttagaagttggatcgatgacatatctgatgggtttcagccaagaa |
208 |
Q |
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| T |
8169881 |
tatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttcagttagaagttggatcggtgacatatctgatgggtttcagccaagaa |
8169980 |
T |
|
| Q |
209 |
gattgtagagggagaacgttttt |
231 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
8169981 |
gattgtagagggagaactttttt |
8170003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 458 - 820
Target Start/End: Original strand, 7591014 - 7591389
Alignment:
| Q |
458 |
aacacaacaaagcgtggtggctgcaatcctattattatgttttgcaatggctgaaaaacaaaataacatgctgaacaagaactatggtgtgaatcaagat |
557 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7591014 |
aacacaacaaagcgtggtggcttcaatcctattatc---tttagcaatggctgaaaaacaaaataacgtgctgaacaagaactatggtgtgaatcaagat |
7591110 |
T |
|
| Q |
558 |
gatgcatctctagtgtcttgagtttatctcaaaagatttgcatcaaagacatattcgtaatgagttgtctttatcagaagtgttgcaaaaggtatagcct |
657 |
Q |
| |
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| T |
7591111 |
gatgcatctctagtgt-gtgaattaatctctaatgatttgcatcaaagacatcttcgtaatgagtcttctttatcagaa--gttgcaaaaggtatagtct |
7591207 |
T |
|
| Q |
658 |
---------------atttattacgtcttctt-aagaatgaaaaagtgttag----atatacttgacaaaaaatggaactctgagggaatctatatagtg |
737 |
Q |
| |
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| T |
7591208 |
atattcgtttagctaatttattgcgtgttcttaaagaatgaataagtgttagatatatatacttgacaaaaaatggaactctgagggaatctatatagtg |
7591307 |
T |
|
| Q |
738 |
aatgatctacgtcaattatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatg |
820 |
Q |
| |
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| T |
7591308 |
aatgatctacgtcaattatcatttcaaggttcgtggcttgattcaatagaaaagttatttgctaataat-ctacataatgatg |
7591389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 652 - 881
Target Start/End: Complemental strand, 8225690 - 8225459
Alignment:
| Q |
652 |
tagcctatttattacgtcttcttaagaatgaaaaagtgttagatata---cttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacg |
748 |
Q |
| |
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||||| ||||||||||||| ||||| ||||||| |||||||||||| |||||||||||| |||| ||||||| || ||||| |||||||||||||| |
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| T |
8225690 |
tagccgatttattacgtctgattaaggatgaaaaggtgttagatataatacttgacaaaaaaaggaattctgaggtaaagtatatggtgaatgatctacg |
8225591 |
T |
|
| Q |
749 |
tcaattatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatgttaattccttggctaagttggaagatta |
848 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |||| ||||||||||||| | |
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| T |
8225590 |
tcaattttcttttcaaggttcgtggcttgattcaatagaaaaattatttgttaataat-ctacacgatgatgttagttctttggttaagttggaagatca |
8225492 |
T |
|
| Q |
849 |
tgaaaatcaattgtgtaatgaacatatgtttct |
881 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||| |
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| T |
8225491 |
tgaaaatcaactgtgtaaggaacataggtttct |
8225459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 314
Target Start/End: Original strand, 8172461 - 8172544
Alignment:
| Q |
229 |
tttatattcccgtcaatatttctatgtacaannnnnnnnnngttgtaggttttagaacctagaaaag-tattaatatattagttttt |
314 |
Q |
| |
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| T |
8172461 |
tttatattcccgtcaatatttctatgtacaatttttttt---ttgtaggttttagaacctagaaaagttattaatatattagttttt |
8172544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 996 - 1054
Target Start/End: Original strand, 44105684 - 44105742
Alignment:
| Q |
996 |
atggaaaccttcttacaacaacgtgaagctaaacaaacagagattgaacaagtttttat |
1054 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
44105684 |
atggaaaccttcatacaacaatgtgaagctaaacaaacagagattgaacaagtctttat |
44105742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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