View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_high_11 (Length: 369)
Name: NF17025_high_11
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 1505314 - 1505143
Alignment:
| Q |
14 |
tactataaaatttagtctcgaaccttcaaaaatataaaatttcatttgataaaataggttcaaattatactatttttgaattaaaattaatatttaacta |
113 |
Q |
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| T |
1505314 |
tactataaaatttagtctcaaaccttcaaaaatataaaatttcatttgataaaataggctcaaattctactatttttgaattaaaattaatatgtaacta |
1505215 |
T |
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| Q |
114 |
atattgtttcaatcctttcaacnnnnnnnncccttcaaacaaaatcctctagaaggaaaaactaatatttttt |
186 |
Q |
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| T |
1505214 |
atattgtttcaatcctttcaac-aaaaaaacccttcaaacaaaatcctctagaaggaaaaactaatatttttt |
1505143 |
T |
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Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 250 - 353
Target Start/End: Complemental strand, 1505073 - 1504970
Alignment:
| Q |
250 |
gattattaccattaacctaaaaataaggtaacataccagaaagatacctgttgacgacggatatataaatttcatgatattaatcattgatcatcacatg |
349 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1505073 |
gattattactattaacctaaaaataaggtaacataccagaaagatacctgttgacgacggatatataaatttcatgatattaatcattgatcatcacatg |
1504974 |
T |
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| Q |
350 |
ttgt |
353 |
Q |
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|||| |
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| T |
1504973 |
ttgt |
1504970 |
T |
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