View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_high_16 (Length: 286)
Name: NF17025_high_16
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 34691494 - 34691248
Alignment:
| Q |
22 |
atagaggtccaaaagcttttcacaaacgagaccctccctcnnnnnnnnnnnccattacttcatcttctgtccctttgttctgttttgcttttgttagaat |
121 |
Q |
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| T |
34691494 |
atagaggtccaaaagcttttcacaaacgagaccctccctctttttttttt-ccattacttcatcttctttccctttgttctgttttgcttttgttagaat |
34691396 |
T |
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| Q |
122 |
atggctaagattcctaatactgtattctctttgagacacttcttggtgctatccctcgctttgaacgtgagtttcatactccgaatgttttatgatggtg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34691395 |
atggctaagattcctaatactgtattctctttgagacacttcttggtgctatccctcgctttgaacgtgagtttcatactccgaatgttttatgatggtg |
34691296 |
T |
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| Q |
222 |
aagttggccataacaactcttccttgaatagagctaaagctaataata |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34691295 |
aagttggccataacaactcttccttgaatagagctaaagctaataata |
34691248 |
T |
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