View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17025_high_18 (Length: 275)

Name: NF17025_high_18
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17025_high_18
NF17025_high_18
[»] chr8 (19 HSPs)
chr8 (61-127)||(30444798-30444864)
chr8 (61-117)||(26519984-26520040)
chr8 (61-117)||(36103252-36103308)
chr8 (61-118)||(13145075-13145132)
chr8 (61-117)||(29611814-29611870)
chr8 (61-117)||(31980048-31980104)
chr8 (61-113)||(40733641-40733693)
chr8 (61-117)||(44346223-44346279)
chr8 (61-117)||(14729-14785)
chr8 (61-117)||(10593564-10593619)
chr8 (61-117)||(29256915-29256971)
chr8 (61-117)||(31976667-31976723)
chr8 (61-117)||(33376831-33376887)
chr8 (61-117)||(35978594-35978650)
chr8 (61-117)||(43185471-43185527)
chr8 (61-123)||(23011885-23011948)
chr8 (71-113)||(29317199-29317240)
chr8 (71-117)||(29482343-29482389)
chr8 (61-117)||(33986488-33986544)
[»] chr6 (10 HSPs)
chr6 (61-117)||(34364896-34364952)
chr6 (61-117)||(34244845-34244901)
chr6 (61-117)||(13487427-13487483)
chr6 (72-117)||(15615922-15615967)
chr6 (61-117)||(29889298-29889355)
chr6 (61-117)||(8475620-8475676)
chr6 (71-117)||(9697889-9697935)
chr6 (71-124)||(6357820-6357873)
chr6 (76-117)||(10105512-10105553)
chr6 (61-117)||(1368967-1369023)
[»] chr5 (27 HSPs)
chr5 (61-117)||(20320531-20320587)
chr5 (61-117)||(12064320-12064376)
chr5 (61-117)||(12480391-12480447)
chr5 (61-117)||(32249651-32249707)
chr5 (61-117)||(13390964-13391020)
chr5 (61-117)||(19533769-19533825)
chr5 (61-117)||(25935153-25935209)
chr5 (76-118)||(14835297-14835339)
chr5 (61-115)||(15270421-15270475)
chr5 (61-111)||(38178813-38178863)
chr5 (61-111)||(38206037-38206087)
chr5 (61-118)||(28489953-28490010)
chr5 (61-117)||(28490397-28490454)
chr5 (61-117)||(6771825-6771881)
chr5 (61-117)||(37722756-37722812)
chr5 (61-117)||(41761746-41761802)
chr5 (61-116)||(22304674-22304729)
chr5 (13-51)||(18442955-18442993)
chr5 (13-51)||(37241217-37241255)
chr5 (61-122)||(927792-927853)
chr5 (77-118)||(17492690-17492731)
chr5 (76-117)||(17541886-17541927)
chr5 (76-117)||(37091093-37091134)
chr5 (76-117)||(40089414-40089455)
chr5 (61-117)||(22304736-22304792)
chr5 (61-117)||(33995446-33995502)
chr5 (61-117)||(35111702-35111758)
[»] chr3 (28 HSPs)
chr3 (61-117)||(8762278-8762334)
chr3 (61-115)||(34396148-34396202)
chr3 (61-117)||(19475968-19476024)
chr3 (61-117)||(28181800-28181856)
chr3 (61-117)||(38506486-38506542)
chr3 (61-122)||(33871761-33871822)
chr3 (70-123)||(52527510-52527563)
chr3 (61-117)||(34089067-34089123)
chr3 (61-117)||(47714428-47714484)
chr3 (61-113)||(48948073-48948125)
chr3 (70-113)||(645741-645784)
chr3 (61-116)||(48824637-48824692)
chr3 (77-123)||(7977058-7977104)
chr3 (71-117)||(21307113-21307159)
chr3 (71-117)||(54761428-54761474)
chr3 (61-122)||(21731410-21731471)
chr3 (10-43)||(50168257-50168290)
chr3 (61-113)||(28092155-28092206)
chr3 (70-122)||(35279467-35279519)
chr3 (61-117)||(36397513-36397569)
chr3 (61-117)||(53469953-53470009)
chr3 (71-117)||(671190-671236)
chr3 (61-122)||(2105221-2105282)
chr3 (76-117)||(24241713-24241754)
chr3 (10-51)||(46636299-46636340)
chr3 (15-51)||(15760164-15760200)
chr3 (61-117)||(43863488-43863544)
chr3 (15-51)||(44288082-44288118)
[»] chr2 (26 HSPs)
chr2 (61-117)||(2925142-2925198)
chr2 (61-123)||(10480271-10480333)
chr2 (13-123)||(7611415-7611515)
chr2 (61-119)||(21504941-21504999)
chr2 (61-122)||(769523-769584)
chr2 (61-117)||(1583334-1583390)
chr2 (61-117)||(11794047-11794103)
chr2 (61-117)||(32839190-32839246)
chr2 (61-117)||(33188791-33188847)
chr2 (61-117)||(35047203-35047259)
chr2 (61-117)||(39630717-39630773)
chr2 (61-116)||(19193746-19193801)
chr2 (76-122)||(11141811-11141857)
chr2 (71-117)||(17906143-17906189)
chr2 (13-51)||(30265784-30265822)
chr2 (61-122)||(3092737-3092798)
chr2 (76-117)||(8735967-8736008)
chr2 (61-117)||(7309438-7309494)
chr2 (61-117)||(13018236-13018292)
chr2 (61-117)||(14306366-14306422)
chr2 (16-123)||(31703919-31704016)
chr2 (61-113)||(44256125-44256177)
chr2 (71-122)||(7684606-7684657)
chr2 (70-117)||(8736512-8736559)
chr2 (61-115)||(11532118-11532172)
chr2 (61-123)||(19231013-19231074)
[»] chr4 (21 HSPs)
chr4 (61-116)||(47108710-47108765)
chr4 (61-117)||(10633183-10633239)
chr4 (61-117)||(40547770-40547826)
chr4 (71-117)||(3803726-3803772)
chr4 (13-117)||(30303572-30303666)
chr4 (61-122)||(46242619-46242680)
chr4 (61-117)||(21012441-21012497)
chr4 (61-117)||(27284222-27284278)
chr4 (61-117)||(31474001-31474057)
chr4 (61-117)||(35470614-35470670)
chr4 (61-117)||(41139962-41140018)
chr4 (76-116)||(42776590-42776630)
chr4 (10-51)||(17727860-17727901)
chr4 (61-117)||(2126328-2126384)
chr4 (61-117)||(21782463-21782519)
chr4 (61-117)||(31948063-31948119)
chr4 (61-117)||(42775782-42775838)
chr4 (61-117)||(54566664-54566720)
chr4 (70-116)||(5579654-5579700)
chr4 (70-115)||(16299781-16299826)
chr4 (61-117)||(19461268-19461324)
[»] chr7 (24 HSPs)
chr7 (13-118)||(38320732-38320826)
chr7 (61-117)||(14602773-14602829)
chr7 (61-117)||(14790559-14790615)
chr7 (61-117)||(26161989-26162045)
chr7 (61-117)||(43791513-43791569)
chr7 (205-241)||(23696324-23696360)
chr7 (61-117)||(35456296-35456352)
chr7 (61-117)||(39342162-39342218)
chr7 (71-117)||(35488714-35488759)
chr7 (61-114)||(2411803-2411856)
chr7 (61-121)||(9784451-9784512)
chr7 (61-117)||(29639065-29639122)
chr7 (61-122)||(30587427-30587488)
chr7 (61-117)||(23548121-23548177)
chr7 (61-117)||(28538679-28538735)
chr7 (61-117)||(36328330-36328386)
chr7 (61-117)||(37460472-37460528)
chr7 (61-117)||(42817014-42817070)
chr7 (13-51)||(41442661-41442699)
chr7 (61-117)||(6498616-6498672)
chr7 (61-113)||(40496210-40496262)
chr7 (61-117)||(45181759-45181814)
chr7 (61-117)||(45984825-45984881)
chr7 (61-117)||(45989185-45989241)
[»] scaffold0169 (1 HSPs)
scaffold0169 (61-117)||(4510-4566)
[»] chr1 (12 HSPs)
chr1 (61-120)||(26500941-26501000)
chr1 (70-117)||(35499549-35499596)
chr1 (71-117)||(47165077-47165123)
chr1 (13-101)||(10166948-10167026)
chr1 (61-122)||(47541848-47541909)
chr1 (61-117)||(946871-946927)
chr1 (61-117)||(24273086-24273142)
chr1 (61-114)||(41822078-41822131)
chr1 (61-117)||(220644-220700)
chr1 (61-117)||(12293024-12293080)
chr1 (61-117)||(15467488-15467544)
chr1 (61-117)||(37447428-37447484)
[»] scaffold0417 (1 HSPs)
scaffold0417 (70-116)||(11499-11545)
[»] scaffold0027 (1 HSPs)
scaffold0027 (61-117)||(11321-11377)


Alignment Details
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 30444864 - 30444798
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaagatca 127  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||||    
T  30444864 aattgcctagaattttaaattctttaaaatttccaaattacttcatccaaacacactctaaggatca 30444798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 26520040 - 26519984
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| |||||||||||||||||||||||  ||||||||| |||||||||||||    
T  26520040 aattgcctagaattttaaattctttaaaatttatcaattactttatccaaacacact 26519984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 36103252 - 36103308
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||    
T  36103252 aattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacact 36103308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 13145075 - 13145132
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactt 118  Q
    |||||||| ||||||||||||||||||| ||| |||||||| ||| ||||||||||||    
T  13145075 aattgcctagaattttaaattctttaaattttcccaattacctcacccaaacacactt 13145132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 29611814 - 29611870
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||  |||| ||||||||||||||||||||||||||  ||||||||||||||    
T  29611814 aattgcctaaaattctaaattctttaaaattttccaattaccacatccaaacacact 29611870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 31980104 - 31980048
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  31980104 aattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 31980048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 40733693 - 40733641
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaaca 113  Q
    |||||||| |||||||||||||||||||||||  ||||||| |||||||||||    
T  40733693 aattgcctagaattttaaattctttaaaatttctcaattacctcatccaaaca 40733641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 44346279 - 44346223
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  44346279 aattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 44346223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 14729 - 14785
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||| | |||||||||||||||    
T  14729 aattgcctagaattctaaattctttaaaatttctcaatttcctcatccaaacacact 14785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 10593564 - 10593619
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| |||||||||||| ||||||||||  ||||||| |||||||||||||||    
T  10593564 aattgcctagaattttaaatt-tttaaaatttctcaattacctcatccaaacacact 10593619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 29256971 - 29256915
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| || ||||||||||||    
T  29256971 aattgcctagaattctaaattctttaaaatttctcaattacctcgtccaaacacact 29256915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 31976723 - 31976667
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| ||||||||| |||||    
T  31976723 aattgcctagaattctaaattctttaaaatttctcaattacctcatccaaaaacact 31976667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 33376887 - 33376831
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  33376887 aattacctagaattctaaattctttaaaatttatcaattacctcatccaaacacact 33376831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 35978650 - 35978594
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||| || |||||||||||||||||||||||  ||||| | |||||||||||||||    
T  35978650 aattgactagaattttaaattctttaaaatttctcaattgcctcatccaaacacact 35978594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 43185471 - 43185527
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||| || ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  43185471 aattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 43185527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 23011885 - 23011948
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatcc-aaacacactttaaag 123  Q
    |||||||| |||||||||||||||||||||||   |||||| |||||| ||||||||| |||||    
T  23011885 aattgcctagaattttaaattctttaaaatttctaaattacctcatccaaaacacactctaaag 23011948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 29317199 - 29317240
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaaca 113  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  29317199 aattttaaattctttagaatttt-caattacttcatccaaaca 29317240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 29482389 - 29482343
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| |||||||||||||||||  ||||||| |||||||||||||||    
T  29482389 aattctaaattctttaaaatttctcaattacctcatccaaacacact 29482343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 33986488 - 33986544
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| |||||   |||||||||||||||  ||||||| |||||||||||||||    
T  33986488 aattgcctagaattccgaattctttaaaatttctcaattacctcatccaaacacact 33986544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 34364896 - 34364952
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  34364896 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 34364952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 34244901 - 34244845
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||    
T  34244901 aattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacact 34244845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 13487427 - 13487483
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||| || ||||||||||||||||||||||| | |||||| |||||||||||||||    
T  13487427 aattgtctagaattttaaattctttaaaatttccaaattacctcatccaaacacact 13487483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 15615967 - 15615922
Alignment:
Q  72 attttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||    
T  15615967 attttaaattctttaaaatttatcaattacctcatccaaacacact 15615922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 29889355 - 29889298
Alignment:
Q  61 aattgccttgaattttaaattcttt-aaaattttccaattacttcatccaaacacact 117  Q
    |||||||| |||||||||||||||| |||| |||| |||||| |||||||||||||||    
T  29889355 aattgcctagaattttaaattctttaaaaaatttcaaattacctcatccaaacacact 29889298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 8475620 - 8475676
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| ||||| |||||||||    
T  8475620 aattgcctagaattctaaattctttaaaatttctcaattacctcatctaaacacact 8475676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 9697889 - 9697935
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| |||||||||||||||||  |||||||| ||||||||||||||    
T  9697889 aattctaaattctttaaaatttctcaattactccatccaaacacact 9697935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 6357873 - 6357820
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaacacactttaaaga 124  Q
    |||| ||||||||| ||||||| |||||||| || |||||||||||| ||||||    
T  6357873 aattctaaattcttcaaaatttcccaattacctcgtccaaacacactctaaaga 6357820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 10105512 - 10105553
Alignment:
Q  76 taaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||||||||||||  ||||||| |||||||||||||||    
T  10105512 taaattctttaaaatttctcaattacctcatccaaacacact 10105553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 1368967 - 1369023
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||| ||||||||||||||||| |||||  ||||||| || ||||||||||||    
T  1368967 aattacctagaattttaaattctttataatttctcaattacctcgtccaaacacact 1369023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 20320587 - 20320531
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  20320587 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 20320531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 12064376 - 12064320
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||    
T  12064376 aattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacact 12064320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 12480391 - 12480447
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||| | ||||| |||||||||||||||||||||||||| |||||||||||||||    
T  12480391 aattgcttagaattctaaattctttaaaattttccaattacctcatccaaacacact 12480447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 32249707 - 32249651
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  32249707 aattgcctagaattctaaattctttaaaattttcaaattacctcatccaaacacact 32249651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 13391020 - 13390964
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  13391020 aattgcttagaattctaaattctttaaaatttcccaattacctcatccaaacacact 13390964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 19533825 - 19533769
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||||||||||||||||||||| | |||||| |||| ||||||||||    
T  19533825 aattgcctagaattttaaattctttaaaatttccaaattacctcattcaaacacact 19533769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 25935209 - 25935153
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| |||||||||||||||||||||||   |||||| |||||||||||||||    
T  25935209 aattgcctagaattttaaattctttaaaatttctaaattacctcatccaaacacact 25935153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 14835297 - 14835339
Alignment:
Q  76 taaattctttaaaattttccaattacttcatccaaacacactt 118  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  14835297 taaattctttaaaatttcccaattactttatccaaacacactt 14835339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 15270475 - 15270421
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacaca 115  Q
    |||| ||| ||||| |||||||||||||||||||||||||| |||| ||||||||    
T  15270475 aattacctagaattctaaattctttaaaattttccaattacctcattcaaacaca 15270421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 38178863 - 38178813
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaa 111  Q
    ||||||||  |||| |||||||||||||||||||||||||| |||||||||    
T  38178863 aattgcctataattctaaattctttaaaattttccaattacctcatccaaa 38178813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 38206087 - 38206037
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaa 111  Q
    ||||||||  |||| |||||||||||||||||||||||||| |||||||||    
T  38206087 aattgcctataattctaaattctttaaaattttccaattacctcatccaaa 38206037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 28489953 - 28490010
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactt 118  Q
    |||||||| | ||| ||||||| ||||||||||| |||||| ||||||||||||||||    
T  28489953 aattgcctaggattctaaattccttaaaattttctaattacctcatccaaacacactt 28490010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 28490397 - 28490454
Alignment:
Q  61 aattgccttgaattttaaattcttt-aaaattttccaattacttcatccaaacacact 117  Q
    ||||||||||||||||||||||||| ||||  || ||||||| |||||||||||||||    
T  28490397 aattgccttgaattttaaattctttaaaaaaatttcaattacctcatccaaacacact 28490454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 6771881 - 6771825
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||| | ||||| ||||||||||||||||| |||||||  |||||||||||||||    
T  6771881 aattgcatagaattctaaattctttaaaatttcccaattaactcatccaaacacact 6771825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 37722812 - 37722756
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||| ||||||||||||||||||||||| | |||||||  |||||||||||||    
T  37722812 aattacctagaattttaaattctttaaaatttccaaattactcaatccaaacacact 37722756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 41761802 - 41761746
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||  |||| |||||||||||||||||  ||||||| |||||||||||||||    
T  41761802 aattgcctaaaattctaaattctttaaaatttctcaattacctcatccaaacacact 41761746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 22304674 - 22304729
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacac 116  Q
    ||||| || ||||| |||||||||||||||||  ||||||| ||||||||||||||    
T  22304674 aattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacac 22304729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 18442955 - 18442993
Alignment:
Q  13 aatatttagaaatgaagacaatttaattgaatcatttga 51  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  18442955 aatatttaaaaatgaagacaatttaattgaatgatttga 18442993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 37241255 - 37241217
Alignment:
Q  13 aatatttagaaatgaagacaatttaattgaatcatttga 51  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  37241255 aatatttagaaatgaaaacaatttaattgaataatttga 37241217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 927792 - 927853
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    ||||| || ||||| |||||||||||||||||  ||||||| |||| |||||||||| ||||    
T  927792 aattgtctagaattctaaattctttaaaatttctcaattacctcattcaaacacactctaaa 927853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 17492731 - 17492690
Alignment:
Q  77 aaattctttaaaattttccaattacttcatccaaacacactt 118  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  17492731 aaattttttaaaattttctaattacctcatccaaacacactt 17492690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 17541927 - 17541886
Alignment:
Q  76 taaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||||||||||||  ||||||| |||||||||||||||    
T  17541927 taaattctttaaaatttctcaattacctcatccaaacacact 17541886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 37091093 - 37091134
Alignment:
Q  76 taaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||||||| |||| |||||||| |||||||||||||||    
T  37091093 taaattctttaagatttaccaattacctcatccaaacacact 37091134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 40089455 - 40089414
Alignment:
Q  76 taaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||||||||||| | |||||| |||||||||||||||    
T  40089455 taaattctttaaaatttcctaattacctcatccaaacacact 40089414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 22304792 - 22304736
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| | ||| ||||||||||||||||| |||||||| ||||| ||| |||||    
T  22304792 aattgcctaggattctaaattctttaaaatttcccaattacctcatcaaaatacact 22304736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 33995502 - 33995446
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||  |||| ||| |||||||||||||  ||||||| |||||||||||||||    
T  33995502 aattgcctaaaattctaatttctttaaaatttgtcaattacatcatccaaacacact 33995446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 35111702 - 35111758
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||| ||||| |||||||||||||||||  |||||||  ||||||||||||||    
T  35111702 aattccctagaattctaaattctttaaaatttctcaattaccccatccaaacacact 35111758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 8762278 - 8762334
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  8762278 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 8762334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 34396202 - 34396148
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacaca 115  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||    
T  34396202 aattgcctagaattttaaactctttaaaattttccaattacctcatccaaacaca 34396148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 19475968 - 19476024
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||    
T  19475968 aattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacact 19476024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 28181856 - 28181800
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||    
T  28181856 aattgcctagaattctaaattctttaaaattttccaattacctcgtccaaacacact 28181800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 38506542 - 38506486
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||  |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  38506542 aattgcctaaaattctaaattctttaaaattttccaattacttcattcaaacacact 38506486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 33871822 - 33871761
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    |||||||| ||||||||||||||||||||||| | |||||| ||||||| ||||||| ||||    
T  33871822 aattgcctagaattttaaattctttaaaatttccaaattacctcatccacacacactctaaa 33871761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 52527510 - 52527563
Alignment:
Q  70 gaattttaaattctttaaaattttccaattacttcatccaaacacactttaaag 123  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  52527510 gaattctaaattttttaaaattttccaattacctcatccaaacacactctaaag 52527563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 34089067 - 34089123
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  34089067 aattgcctagaattctaaattctttaaaatttctcaattacatcatccaaacacact 34089123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 47714428 - 47714484
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| |||||| |||||||||||||||| | |||||| |||||||||||||||    
T  47714428 aattgcctagaatttgaaattctttaaaatttccaaattacctcatccaaacacact 47714484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 48948073 - 48948125
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaaca 113  Q
    |||||||| ||||| |||||||||||||||||| ||||||| |||||||||||    
T  48948073 aattgcctagaattctaaattctttaaaatttttcaattacctcatccaaaca 48948125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 645784 - 645741
Alignment:
Q  70 gaattttaaattctttaaaattttccaattacttcatccaaaca 113  Q
    ||||| |||||||||||||||||||||||||| |||||||||||    
T  645784 gaattctaaattctttaaaattttccaattacctcatccaaaca 645741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 48824692 - 48824637
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacac 116  Q
    ||||||||  |||| |||||||||||||||||||||||||| | ||||||||||||    
T  48824692 aattgcctaaaattctaaattctttaaaattttccaattaccttatccaaacacac 48824637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 7977058 - 7977104
Alignment:
Q  77 aaattctttaaaattttccaattacttcatccaaacacactttaaag 123  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||    
T  7977058 aaattctttaaaatttcccaattacctcatccaaacacactctaaag 7977104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 21307159 - 21307113
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||||    
T  21307159 aattctaaattctttaaaatttcccaattacctcatccaaacacact 21307113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 54761474 - 54761428
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||||||| |||||||||| |||||| |||||||||||||||    
T  54761474 aattttaaattctgtaaaattttcaaattacctcatccaaacacact 54761428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 21731410 - 21731471
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    |||||||| |||||||||||||| | ||||||  ||||||| ||||||||||||||| ||||    
T  21731410 aattgcctagaattttaaattctcttaaatttatcaattacctcatccaaacacactctaaa 21731471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 50168290 - 50168257
Alignment:
Q  10 aagaatatttagaaatgaagacaatttaattgaa 43  Q
    ||||||||||||||||||||||||||||||||||    
T  50168290 aagaatatttagaaatgaagacaatttaattgaa 50168257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 28092155 - 28092206
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaaca 113  Q
    |||||||| |||||| ||||||||||||||||||||||||  |||||||||||    
T  28092155 aattgcctagaattt-aaattctttaaaattttccaattagctcatccaaaca 28092206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 35279519 - 35279467
Alignment:
Q  70 gaattttaaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    ||||| ||||||||||||||||| |||||| | ||||||||||||||| ||||    
T  35279519 gaattctaaattctttaaaatttcccaattgcctcatccaaacacactctaaa 35279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 36397569 - 36397513
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||| || ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  36397569 aattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 36397513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 53470009 - 53469953
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  53470009 aattacctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 53469953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 671236 - 671190
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||| ||||||||||||||  ||||||| |||||||||||||||    
T  671236 aattttatattctttaaaatttctcaattacctcatccaaacacact 671190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 2105221 - 2105282
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    |||| ||| ||||| ||||||||| |||||||  |||||||| |||||||||||||| ||||    
T  2105221 aattacctagaattataaattcttcaaaatttctcaattactccatccaaacacactctaaa 2105282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 24241754 - 24241713
Alignment:
Q  76 taaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||||||||||||  ||||||| |||||||||||||||    
T  24241754 taaattctttaaaatttctcaattacctcatccaaacacact 24241713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 46636299 - 46636340
Alignment:
Q  10 aagaatatttagaaatgaagacaatttaattgaatcatttga 51  Q
    ||||||||||| |||||||  |||||||||||||||||||||    
T  46636299 aagaatatttaaaaatgaatgcaatttaattgaatcatttga 46636340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 15760200 - 15760164
Alignment:
Q  15 tatttagaaatgaagacaatttaattgaatcatttga 51  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  15760200 tattcagaaatgaaaacaatttaattgaatcatttga 15760164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 43863544 - 43863488
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||| ||||| |||||||||||||||||  ||||||| || ||||||||||||    
T  43863544 aattacctagaattctaaattctttaaaatttctcaattacctcgtccaaacacact 43863488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 44288118 - 44288082
Alignment:
Q  15 tatttagaaatgaagacaatttaattgaatcatttga 51  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  44288118 tatttagaaatgaaggcaatttaattgaatcttttga 44288082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 2925142 - 2925198
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  2925142 aattgcctagaattctaaattctttaaaatttcccaattacttcatccaaacacact 2925198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 10480271 - 10480333
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaag 123  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||||| |||||| |||||    
T  10480271 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaagcacactctaaag 10480333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 7611515 - 7611415
Alignment:
Q  13 aatatttagaaatgaagacaatttaattgaatcatttgannnnnnnnnaattgccttgaattttaaattctttaaaattttccaattacttcatccaaac 112  Q
    ||||||||| ||||||  |||||||||||||||||||||          ||| ||| ||||||||||||||| |||||||  |||||||| |||||||||    
T  7611515 aatatttaggaatgaaagcaatttaattgaatcatttga----------attacctagaattttaaattcttcaaaatttctcaattactccatccaaac 7611426  T
Q  113 acactttaaag 123  Q
    |||||||||||    
T  7611425 acactttaaag 7611415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 21504941 - 21504999
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacacttt 119  Q
    |||||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||||    
T  21504941 aattgcttagaattctaaattctttaaaatttcccaattacctcatccaaacacacttt 21504999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 769523 - 769584
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    |||||||| ||||| |||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  769523 aattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaaa 769584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 1583390 - 1583334
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  1583390 aattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 1583334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 11794047 - 11794103
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||| || ||||||||||||||||||||||||| |||||| | |||||||||||||    
T  11794047 aattgtctagaattttaaattctttaaaattttcaaattacctaatccaaacacact 11794103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 32839246 - 32839190
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| |||||||||||||||||||||||  ||||||| ||||| |||||||||    
T  32839246 aattgcctagaattttaaattctttaaaatttctcaattacctcatctaaacacact 32839190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 33188847 - 33188791
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  33188847 aattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 33188791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 35047259 - 35047203
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| |||||||||||||||||||||||  |||||||  ||||||||||||||    
T  35047259 aattgcctagaattttaaattctttaaaatttctcaattaccccatccaaacacact 35047203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 39630717 - 39630773
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| |||||||||||| ||||||||||  ||||||| |||||||||||||||    
T  39630717 aattgcctagaattttaaattttttaaaatttctcaattacctcatccaaacacact 39630773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 19193801 - 19193746
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacac 116  Q
    ||||||||  |||||||| || ||||||||||||||||||| ||||||||||||||    
T  19193801 aattgcctaaaattttaatttttttaaaattttccaattacctcatccaaacacac 19193746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 11141811 - 11141857
Alignment:
Q  76 taaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  11141811 taaattctttaaaatttctcaattacctcatccaaacacactttaaa 11141857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 17906143 - 17906189
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||    
T  17906143 aattttaaattctttataatttttcaattacctcatccaaacacact 17906189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 30265784 - 30265822
Alignment:
Q  13 aatatttagaaatgaagacaatttaattgaatcatttga 51  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  30265784 aatatttagaaatgaagacaatttaatttaatcatttga 30265822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 3092737 - 3092798
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    |||| ||| ||||| |||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  3092737 aatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaaa 3092798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 8736008 - 8735967
Alignment:
Q  76 taaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  8736008 taaattctttaaaatttcccaattacctcatccaaacacact 8735967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 7309494 - 7309438
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||| | ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  7309494 aattgcttagaattctaaattctttaaaatttctcaattacctcatccaaacacact 7309438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 13018236 - 13018292
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||| ||||||||||||||||| |||||  ||||||| |||||||||||||||    
T  13018236 aattacctagaattttaaattctttataatttctcaattacctcatccaaacacact 13018292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 14306422 - 14306366
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||| || ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  14306422 aattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 14306366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 31704016 - 31703919
Alignment:
Q  16 atttagaaatgaagacaatttaattgaatcatttgannnnnnnnnaattgccttgaattttaaattctttaaaattttccaattacttcatccaaacaca 115  Q
    ||||||| || |||||||||||||||||||||||||          |||| || ||||| |||||| | ||||||||||||||||| |||| ||||||||    
T  31704016 atttagatataaagacaatttaattgaatcatttga----------attgactagaattctaaattatctaaaattttccaattacctcattcaaacaca 31703927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 44256125 - 44256177
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaaca 113  Q
    |||||||| ||||| |||||||||||||||||  ||||||| |||||||||||    
T  44256125 aattgcctagaattctaaattctttaaaatttctcaattacctcatccaaaca 44256177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 7684606 - 7684657
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||| ||||    
T  7684606 aattttaaattctttaaaatttttaaattaccttatccaaacacactctaaa 7684657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 8736512 - 8736559
Alignment:
Q  70 gaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||||||||||||||||||| ||| || ||||||||| |||||    
T  8736512 gaattttaaattctttaaaattttcaaataacctcatccaaatacact 8736559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 11532172 - 11532118
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacaca 115  Q
    |||||||| |||||||||||||||||||| || | |||||  |||||||||||||    
T  11532172 aattgcctagaattttaaattctttaaaacttccaaattatctcatccaaacaca 11532118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 19231074 - 19231013
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaag 123  Q
    |||||||| ||||| ||| |||||||||||||  ||||||| ||||||||||||||| |||||    
T  19231074 aattgcctagaattctaa-ttctttaaaatttctcaattacctcatccaaacacactctaaag 19231013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 47108710 - 47108765
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacac 116  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  47108710 aattgcctagaattctaaattctttaaaattttccaattacctcatccaaacacac 47108765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 10633183 - 10633239
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||    
T  10633183 aattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacact 10633239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 40547826 - 40547770
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  40547826 aattgcctagaattttaaattctttaaaatttctcaattacctcatccaaacacact 40547770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 3803726 - 3803772
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||    
T  3803726 aattttaaattctttaaaattttcaaattacctcatccaaacacact 3803772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 30303572 - 30303666
Alignment:
Q  13 aatatttagaaatgaagacaatttaattgaatcatttgannnnnnnnnaattgccttgaattttaaattctttaaaattttccaattacttcatccaaac 112  Q
    |||||||||||||||||  | ||||||||||||||||||          ||||||| |||||||||||||||||||||||  ||||||  ||||||||||    
T  30303572 aatatttagaaatgaaggtagtttaattgaatcatttga----------attgcctagaattttaaattctttaaaatttctcaattatctcatccaaac 30303661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 46242680 - 46242619
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    |||||| | ||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  46242680 aattgcttagaattataaattctttaaaatttcccaattacctcatccaaacacactctaaa 46242619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 21012497 - 21012441
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||| || ||||||||||||||||||||||||  |||||| |||||||||||||||    
T  21012497 aattgtctagaattttaaattctttaaaatttttaaattacctcatccaaacacact 21012441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 27284278 - 27284222
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| ||||||||||||||||||| |||||  |||||||||||||||    
T  27284278 aattgcctagaattctaaattctttaaaattttcaaattatatcatccaaacacact 27284222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 31474001 - 31474057
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||| || ||||||||||||||||||||||| | |||||| |||||||||||||||    
T  31474001 aattgtctagaattttaaattctttaaaatttccaaattacctcatccaaacacact 31474057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 35470614 - 35470670
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  35470614 aattgcctagaattctaaattctttaaaatttctcaattacatcatccaaacacact 35470670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 41139962 - 41140018
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||| | |||||||||||||||||||||||  |||||||||| ||||||||||||    
T  41139962 aattgcttagaattttaaattctttaaaatttctcaattacttcttccaaacacact 41140018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 42776590 - 42776630
Alignment:
Q  76 taaattctttaaaattttccaattacttcatccaaacacac 116  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  42776590 taaattctttaaaattttccaattacctcatccaaacacac 42776630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 17727860 - 17727901
Alignment:
Q  10 aagaatatttagaaatgaagacaatttaattgaatcatttga 51  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  17727860 aagaatatttagaaatgaagtcaatttaattgaataatttga 17727901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 2126328 - 2126384
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  |||||||  ||||||||||||||    
T  2126328 aattgcctagaattctaaattctttaaaatttctcaattaccccatccaaacacact 2126384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 21782463 - 21782519
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||| || ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  21782463 aattgtctagaattctaaattctttaaaatttcacaattacctcatccaaacacact 21782519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 31948063 - 31948119
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||  ||||||||||||||||||| ||||||||||| || ||||||| ||||    
T  31948063 aattgcctaaaattttaaattctttaaaagtttccaattacctcgtccaaacgcact 31948119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 42775838 - 42775782
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  42775838 aatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 42775782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 54566664 - 54566720
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||||||||||||||||| |||||||||  |||||||  ||||||||||||||    
T  54566664 aattcccttgaattttaaattcattaaaatttctcaattaccccatccaaacacact 54566720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 5579700 - 5579654
Alignment:
Q  70 gaattttaaattctttaaaattttccaattacttcatccaaacacac 116  Q
    ||||||||||||||| ||||||||| |||||| |||| |||||||||    
T  5579700 gaattttaaattcttcaaaattttctaattacctcattcaaacacac 5579654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 16299826 - 16299781
Alignment:
Q  70 gaattttaaattctttaaaattttccaattacttcatccaaacaca 115  Q
    |||||||||||||| ||| ||||||||||||| |||| ||||||||    
T  16299826 gaattttaaattctctaatattttccaattacctcattcaaacaca 16299781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 19461324 - 19461268
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||  |||||||||||||||||||  ||| |||||| |||| ||||||||||    
T  19461324 aattgcctaaaattttaaattctttaaaaaattctaattacctcattcaaacacact 19461268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 38320732 - 38320826
Alignment:
Q  13 aatatttagaaatgaagacaatttaattgaatcatttgannnnnnnnnaattgccttgaattttaaattctttaaaattttccaattacttcatccaaac 112  Q
    |||||||| |||||||||||||||||||| |||||||||          ||||||| |||||||||||||||||||||||| |||||||  |||||||||    
T  38320732 aatatttaaaaatgaagacaatttaattgtatcatttga----------attgcctagaattttaaattctttaaaatttt-caattaccacatccaaac 38320820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 14602829 - 14602773
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||| ||||||| |||||||||||||||    
T  14602829 aattgcctagaattctaaattctttaaaatttttcaattacctcatccaaacacact 14602773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 14790559 - 14790615
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||    
T  14790559 aattgcctaggattctaaattctttaaaattttccaattacctcatccaaacacact 14790615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 26162045 - 26161989
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||    
T  26162045 aattgcctagaattttaaattctttaaaatttccaaattacctcatccaaacacact 26161989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 43791513 - 43791569
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||  ||||| |||||||||||||||||||||||||| |||||||||||||||    
T  43791513 aattgccaagaattctaaattctttaaaattttccaattacctcatccaaacacact 43791569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 23696324 - 23696360
Alignment:
Q  205 aaaaataactttatattgttcaagtctcctataatga 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  23696324 aaaaataactttatattgttcaagtctcctataatga 23696360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 35456296 - 35456352
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||||||    
T  35456296 aattgcctagaattctaaattctttaaaaattttcaattacctcatccaaacacact 35456352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 39342218 - 39342162
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  39342218 aattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 39342162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 35488714 - 35488759
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  35488714 aattttaaattctttaaaatttt-caattacatcatccaaacacact 35488759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 2411803 - 2411856
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacac 114  Q
    |||||||| ||||| |||||||||||||||||  ||||||| ||||||||||||    
T  2411803 aattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacac 2411856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 9784512 - 9784451
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttc-caattacttcatccaaacacactttaa 121  Q
    ||||||||  ||||||||||||||| ||| |||| |||||||||| ||||||||||||||||    
T  9784512 aattgcctaaaattttaaattcttttaaaatttctcaattacttcgtccaaacacactttaa 9784451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 29639122 - 29639065
Alignment:
Q  61 aattgccttgaattttaaa-ttctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| |||||| ||| ||||||||||||||| |||||| |||||||||||||||    
T  29639122 aattgcctagaatttaaaaattctttaaaattttcaaattacctcatccaaacacact 29639065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 30587488 - 30587427
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    |||||||| ||||| |||||||| ||||||||||||||||| || |||||||| ||| ||||    
T  30587488 aattgcctagaattctaaattctctaaaattttccaattacctcgtccaaacatactataaa 30587427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 23548177 - 23548121
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  23548177 aatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 23548121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 28538735 - 28538679
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||  |||| |||||||||||||||||  ||||||| |||||||||||||||    
T  28538735 aattgcctaaaattctaaattctttaaaatttctcaattacctcatccaaacacact 28538679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 36328386 - 36328330
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||| ||||||||||  ||||||| |||||||||||||||    
T  36328386 aattgcctagaattctaaattttttaaaatttctcaattacctcatccaaacacact 36328330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 37460528 - 37460472
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||| || |||||||||||||||||||| ||| ||||||| ||||||||| |||||    
T  37460528 aattgtctagaattttaaattctttaaaaattttcaattacctcatccaaatacact 37460472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 42817014 - 42817070
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| |||||| ||||||||    
T  42817014 aattgcctagaattctaaattctttaaaatttctcaattacctcatcctaacacact 42817070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 41442699 - 41442661
Alignment:
Q  13 aatatttagaaatgaagacaatttaattgaatcatttga 51  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  41442699 aatatttaggaatgaaggcaatttaattgaatcatttga 41442661  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 6498672 - 6498616
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||||||||   |||||||||| | |||||| |||||||||||||||    
T  6498672 aattgcctagaattttaaagaatttaaaatttccaaattacctcatccaaacacact 6498616  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 40496210 - 40496262
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaaca 113  Q
    |||||||| ||||| |||||||||||||||||   |||||| |||||||||||    
T  40496210 aattgcctagaattataaattctttaaaatttcttaattacctcatccaaaca 40496262  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 45181814 - 45181759
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||| ||| |||||||||| |||||| |||||||||||||||    
T  45181814 aattgcctagaattctaaactctctaaaattttc-aattacctcatccaaacacact 45181759  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 45984825 - 45984881
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  | |||||  ||||||||||||||    
T  45984825 aattgcctagaattctaaattctttaaaatttctctattaccccatccaaacacact 45984881  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 45989185 - 45989241
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  | |||||  ||||||||||||||    
T  45989185 aattgcctagaattctaaattctttaaaatttctctattaccccatccaaacacact 45989241  T

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Target: scaffold0169 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 4510 - 4566
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  4510 aattgcctagaattctaaattctttaaaatttcccaattagttcatccaaacacact 4566  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 26501000 - 26500941
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacacttta 120  Q
    |||| ||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||    
T  26501000 aattacctagaattttaaattctttaaaattttcaaattacctcatccaaacacgcttta 26500941  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 35499549 - 35499596
Alignment:
Q  70 gaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  35499549 gaattctaaattctttaaaattttcaaattacttcatccaaacacact 35499596  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 47165123 - 47165077
Alignment:
Q  71 aattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||    
T  47165123 aattttaaattctttaaaattttcaaattacctcatccaaacacact 47165077  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 10166948 - 10167026
Alignment:
Q  13 aatatttagaaatgaagacaatttaattgaatcatttgannnnnnnnnaattgccttgaattttaaattctttaaaattttccaattac 101  Q
    |||||||||||||||||||| |||||||||||||||||          |||||||| |||||||||||||||||||||||  |||||||    
T  10166948 aatatttagaaatgaagacattttaattgaatcatttg----------aattgcctagaattttaaattctttaaaatttatcaattac 10167026  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 47541909 - 47541848
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacactttaaa 122  Q
    |||||||| |||||||||||||||||||||||   |||||| ||||||||||||||| ||||    
T  47541909 aattgcctagaattttaaattctttaaaatttctaaattacctcatccaaacacactctaaa 47541848  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 946871 - 946927
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||  ||||||| |||||||||||||||    
T  946871 aattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacact 946927  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 24273142 - 24273086
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||| | ||||||||||||||||||||||| | |||||| |||||||||||||||    
T  24273142 aattgcgtagaattttaaattctttaaaatttccaaattacctcatccaaacacact 24273086  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 41822131 - 41822078
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacac 114  Q
    |||||||| ||||| |||||||| ||||||||  ||||||||||||||||||||    
T  41822131 aattgcctagaattctaaattctgtaaaatttctcaattacttcatccaaacac 41822078  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 220644 - 220700
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||| || |||||| ||||||| |||||||||||||||    
T  220644 aattgcctagaattctaaattctctataatttttcaattacctcatccaaacacact 220700  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 12293080 - 12293024
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||| | |||| |||||||| |||||||||||||||    
T  12293080 aattgcctagaattctaaattctttgagatttcccaattacctcatccaaacacact 12293024  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 15467544 - 15467488
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||||||| ||||| |||||||||||||||||   |||||| |||||||||||||||    
T  15467544 aattgcctagaattctaaattctttaaaatttcttaattacctcatccaaacacact 15467488  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 37447484 - 37447428
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    |||| ||| ||||| ||||||||| |||||||  ||| |||||||||||||||||||    
T  37447484 aattacctagaattctaaattcttcaaaatttctcaaatacttcatccaaacacact 37447428  T

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Target: scaffold0417 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 11545 - 11499
Alignment:
Q  70 gaattttaaattctttaaaattttccaattacttcatccaaacacac 116  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  11545 gaattctaaattctttaaaattttccaaatacctcatccaaacacac 11499  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 11321 - 11377
Alignment:
Q  61 aattgccttgaattttaaattctttaaaattttccaattacttcatccaaacacact 117  Q
    ||||||||  |||||||||||||||| ||||| | |||||| |||||||||||||||    
T  11321 aattgcctaaaattttaaattctttacaatttccaaattacctcatccaaacacact 11377  T

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