View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_high_20 (Length: 259)
Name: NF17025_high_20
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 26164728 - 26164502
Alignment:
| Q |
12 |
agatgaagagcaag-attcacattgtaagaaaattaacttcctttcttaaaacaaattaataatagcaaatactaacatatattctaagggtacatgttt |
110 |
Q |
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| T |
26164728 |
agatgaagaacaaggattcacattgtaagaaaattaacttcctt----aaaacaaattaataatagcaaatactaatatatgttctaagggtacatgttt |
26164633 |
T |
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| Q |
111 |
cgaaactcataataaaaaatttgtcttaatagtcgtccatataatttgagtaaagtnnnnnnnnntatattaatgtaaacttgttacttttggaatcttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
26164632 |
cgaaactcataataaaaaatttgtcttaatagtcgtccatataatttgagtaaagtaaaaaaatatatattaatgtaaaattgttacttttggaatcttt |
26164533 |
T |
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| Q |
211 |
aacatgttgttttaagatgtaagttaacaag |
241 |
Q |
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| T |
26164532 |
aacatgttgttttaagatgtaagttaacaag |
26164502 |
T |
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