View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_high_27 (Length: 229)
Name: NF17025_high_27
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_high_27 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold1429 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 14396573 - 14396788
Alignment:
| Q |
17 |
attgatcatatgcaaattaagattacgagaccaaaacaaaaaataaatgggttaaagtctcaggttcgttcttgagtagctccagaatagtcttgatatt |
116 |
Q |
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| T |
14396573 |
attgatcatatgcaaattaagattacgagaccaaaacaaaacataaatgggttgaagtctaaggttcgttcttgagtagctccagaatagtcttgatatt |
14396672 |
T |
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| Q |
117 |
ggatttcatatcatcctacttccgattgacattgttcatttgagcctggtacatgagcctttcaagccaccttttattatta---ttgttatatccttta |
213 |
Q |
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| T |
14396673 |
ggatttcatatcatcctacttcttattgaaattgttcatttgagcctggtaccttagcctttcaacccaccttttattattatttttgttatatccttta |
14396772 |
T |
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| Q |
214 |
tgaaaccactttgcac |
229 |
Q |
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| T |
14396773 |
tgaaaccattttgcac |
14396788 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 17142340 - 17142283
Alignment:
| Q |
170 |
tgagcctttcaagccaccttttattattattgttat-atcctttatgaaaccactttg |
226 |
Q |
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| T |
17142340 |
tgagcctttcaagccaccattttatattattattattatcctttatgaaaccactttg |
17142283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1429 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1429
Description:
Target: scaffold1429; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 480 - 447
Alignment:
| Q |
193 |
ttattattgttatatcctttatgaaaccactttg |
226 |
Q |
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| T |
480 |
ttattattgttatatcctttgtgaaaccactttg |
447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 16604137 - 16604096
Alignment:
| Q |
170 |
tgagcctttcaa-gccaccttttattattattgttatatcct |
210 |
Q |
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| T |
16604137 |
tgagcctttcaaagccatcttttattattattgttatatcct |
16604096 |
T |
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