View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_high_28 (Length: 227)
Name: NF17025_high_28
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_high_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 47271267 - 47271487
Alignment:
| Q |
7 |
aaaaagtgagatatatagggnnnnnnngaagcaacattaaacacgtaggtcttaaaaatgactcaatatatatttattgatgatttgatataggtttggc |
106 |
Q |
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| T |
47271267 |
aaaaagtgagatatatagggaaaaaaagaagcaacattaaacacgtaggtcttaaaaatgactcaatatatatttattgatgatttgatataggtttggc |
47271366 |
T |
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| Q |
107 |
taattcaaccacacgttaccatgagtgaaatgcattagaaaacttaggtggcgccaatagaagaaattaaggaagaaatttttgtttgtgttaggcattt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47271367 |
taattcaaccacacgttaccatgagtgaaatgcattagaaaacttaggtggcgccaatagaagaaattaaggaagaaatttttgtttgtgttaggcattt |
47271466 |
T |
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| Q |
207 |
atcaaaggtgacgtgagtgaa |
227 |
Q |
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||||||||||||||||||||| |
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| T |
47271467 |
atcaaaggtgacgtgagtgaa |
47271487 |
T |
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