View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_high_7 (Length: 496)
Name: NF17025_high_7
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 148 - 387
Target Start/End: Original strand, 1202443 - 1202678
Alignment:
| Q |
148 |
ttcaggttcaggttcaaaatgaaactctctcaatctagtaagtatgtgtgtagtctacttccaggtagtttggaagtgaggtattcagttcaaaaatttg |
247 |
Q |
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| T |
1202443 |
ttcaggttcagattcaaaatgaaactctctcaatctagtaagtatgtgtgtagtctacttccaggtagtttggaagtgaggtattcagttcaaaaatttg |
1202542 |
T |
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| Q |
248 |
atagttcttcttagttaataaatttatatttttctccttttgatgatggctaattagcttttgagctttttggattgttgttatttctcacatgtcacca |
347 |
Q |
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| T |
1202543 |
atagttcttcttagttaataaatttatatttttctccttttgatgatggctaattagcttttgagctttttgga---ttgttatttctcacatgtcacca |
1202639 |
T |
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| Q |
348 |
ccatttgttagcaaaaaatttcatttaagatcttgatatt |
387 |
Q |
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| T |
1202640 |
ccatttgttagc-aaaaatttcatttaagatcttgatatt |
1202678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 384 - 486
Target Start/End: Original strand, 1203927 - 1204029
Alignment:
| Q |
384 |
tattctgcttagtttcccactcctaacaaaaactgctcttaattggtttgttaaaaatcttcagtctttatttataattgcgcctctacttcaaatcatt |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1203927 |
tattctgcttagtttcccactcctaacaaaaactgctcttaattggtttgttaaaaatcttcagtctttatttataattgcgcctctacttcaaagcatt |
1204026 |
T |
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| Q |
484 |
ttc |
486 |
Q |
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| T |
1204027 |
ttc |
1204029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 1202398 - 1202433
Alignment:
| Q |
18 |
ttattgttgtaagtttattacaatcaaacctaagat |
53 |
Q |
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| T |
1202398 |
ttattgttgtaagtttattacaatcaaacctgagat |
1202433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Original strand, 1200751 - 1200780
Alignment:
| Q |
385 |
attctgcttagtttcccactcctaacaaaa |
414 |
Q |
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| T |
1200751 |
attctgcttagtttcccactcctaacaaaa |
1200780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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