View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_low_10 (Length: 406)
Name: NF17025_low_10
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 14521138 - 14520767
Alignment:
| Q |
16 |
acttatataggttctaatggtgatacttataaaggtttttgggttatggatatgaaaaatggtaaagggacacaaagttattgtaatggtgatttttatg |
115 |
Q |
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| T |
14521138 |
acttatataggttctaatggtgatacttataaaggtttttgggttatggatatgaaaaatggtaaagggacacaaagttattgtaatggtgatttttatg |
14521039 |
T |
|
| Q |
116 |
atggagaatggaaaaaagggttgcaaaatggacatgggaggtatcaatggaagaatgggaatcattatattggtcaatggaggaatggtttgtttgatgg |
215 |
Q |
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| T |
14521038 |
atggagaatggaaaaaagggttgcaaaatggacatgggaggtatcaatggaagaatgggaatcattatattggtcaatggaggaatggtttgtttgatgg |
14520939 |
T |
|
| Q |
216 |
aaatggtactttgatgtggcaaaatgggaatagatatgatggttgttgggaagaaggttttcctaaagggaatggtacatttaggtggagtgatggtagt |
315 |
Q |
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| T |
14520938 |
aaatggtactttgatgtggcaaaatgggaatagatatgatggttgttgggaagaaggttttcctaaagggaatggtacatttaggtggagtgatggtagt |
14520839 |
T |
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| Q |
316 |
ttttatgttggtatttggagtaaagattcaaaggaacaaagtggtacttattatccttcttctggtgattcc |
387 |
Q |
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| T |
14520838 |
ttttatgttggtatttggagtaaagattcaaaggaacaaagtggtacttattatccttcttctggtgattcc |
14520767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 4193014 - 4193369
Alignment:
| Q |
16 |
acttatataggttctaatggtgatacttataaaggtttttgggttatggatatgaaaaatggtaaagggacacaaagttattgtaatggtgatttttatg |
115 |
Q |
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| T |
4193014 |
acttatataggttcatctggtgatacatataaagggaattgggttatgaatttgaaaaatggggatggtaatgagagttatcctaatggtgatttttatg |
4193113 |
T |
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| Q |
116 |
atggagaatggaaaaaagggttgcaaaatggacatgggaggtatcaatggaagaatgggaatcattatattggtcaatggaggaatggtttgtttgatgg |
215 |
Q |
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|||| || |||||||| || |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
4193114 |
atggtgagtggaaaaagggtgtgcaaaatggacatggtaggtatcaatggaaaaatgggaaccattatattggtcaatggaggaatggtttgtttaatgg |
4193213 |
T |
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| Q |
216 |
aaatggtactttgatgtggcaaaatgggaatagatatgatggttgttgggaagaaggttttcctaaagggaatggtacatttaggtggagtgatggtagt |
315 |
Q |
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| T |
4193214 |
gaatggtacaatgatgtggcaaaatgggaataggtatgatggttgttgggaaaatggttttccgaaagggaatggtacgtttaggtggtctgatggtagt |
4193313 |
T |
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| Q |
316 |
ttttatgttggtatttggagtaaagattcaaaggaacaaagtggtacttattatcc |
371 |
Q |
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| T |
4193314 |
ttttatgtcggtgtttggagtaaagatccgaaagaacaaactggtacttattatcc |
4193369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 238 - 375
Target Start/End: Complemental strand, 19642819 - 19642682
Alignment:
| Q |
238 |
aatgggaatagatatgatggttgttgggaagaaggttttcctaaagggaatggtacatttaggtggagtgatggtagtttttatgttggtatttggagta |
337 |
Q |
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||||||||||| |||||||| | ||||||||| ||||| |||||||||||||| || || | ||| ||||||| ||||||||||| |||| |||||||| |
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| T |
19642819 |
aatgggaataggtatgatggctattgggaagatggtttgcctaaagggaatggaactttcaaatggggtgatggaagtttttatgtaggtaattggagta |
19642720 |
T |
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| Q |
338 |
aagattcaaaggaacaaagtggtacttattatccttct |
375 |
Q |
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| T |
19642719 |
aggatccaagagatcaaagtggaacatattatccttct |
19642682 |
T |
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