View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_low_11 (Length: 404)
Name: NF17025_low_11
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 386
Target Start/End: Original strand, 39850115 - 39850489
Alignment:
| Q |
14 |
gaagagcaatagatgaagttatagctgaaaaattaggagnnnnnnnnnnnn--atcaataaaggaaatgcattagtagattaactgatgaaacttaatcc |
111 |
Q |
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| T |
39850115 |
gaagagcaatagatgaagttatagctgaaaaattaggagtatatatatatataatcaataaaggaaatgcattagtagattaactgatgaaacttaatcc |
39850214 |
T |
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| Q |
112 |
ttgcaaatttttctaacttgattctttcacaagcaacttttcacaaaatcctaacttaaaataattgaaatagttgtactgttcaaactgccaagtcatt |
211 |
Q |
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| T |
39850215 |
ttgcaaatttttctaacttgattctttcacaagcaacttttcacaaaatcctaacttaaaataattgaaatagttgtactgttcaaactgccaagtcatt |
39850314 |
T |
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| Q |
212 |
gtagattgataatttaaaaaatactttgatactgtagtttggctttatcaaatgcatgtatcgatttaaggatacctcctatatgtcttgaatcaattta |
311 |
Q |
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| T |
39850315 |
gtagattgataatttaaaaaatactttgatactgtagtttggctttatcaaatgcatgtatcgatttaaggatacctcctatatgtctttaatcaattta |
39850414 |
T |
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| Q |
312 |
agacgtattcttgtttcaaaaatgttatccaaggccttaattgaattgattctaaacaatcctgaatcgattaaa |
386 |
Q |
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| T |
39850415 |
agacgtattcttgtttcaaaaatgttatccaaggccttaattgaattgattctaaacaatcctgaatcgattaaa |
39850489 |
T |
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