View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17025_low_13 (Length: 324)

Name: NF17025_low_13
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17025_low_13
NF17025_low_13
[»] chr5 (1 HSPs)
chr5 (1-315)||(18964927-18965241)
[»] chr7 (6 HSPs)
chr7 (114-321)||(14076470-14076677)
chr7 (114-321)||(14386498-14386705)
chr7 (149-264)||(1986100-1986215)
chr7 (185-261)||(13417071-13417147)
chr7 (188-230)||(19351248-19351290)
chr7 (186-230)||(16839560-16839604)
[»] chr6 (6 HSPs)
chr6 (186-264)||(6921495-6921573)
chr6 (138-264)||(20770449-20770575)
chr6 (192-264)||(6954664-6954736)
chr6 (149-264)||(6943099-6943214)
chr6 (186-264)||(6948025-6948103)
chr6 (191-264)||(6935363-6935436)
[»] chr4 (2 HSPs)
chr4 (114-250)||(53774627-53774763)
chr4 (17-57)||(53774527-53774567)
[»] chr2 (1 HSPs)
chr2 (13-66)||(20975220-20975273)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 18965241 - 18964927
Alignment:
Q  1 agtgcgaaacacggtaaaagttttcactttgggtgttaatatttggaaagatattcagagttttccgggggagactgtgtttcatcctaaatctatgttg 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  18965241 agtgagaaacacggtaaaagttttcactttgggtgttaatatttggaaagatattcagagttttccggtggagaccgtgtttcatcctaaatctatgttg 18965142  T
Q  101 tttgattacaatagtgtgtatttgagtaacagtttaagttggttggtccgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtga 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18965141 gttgattacaatagtgtgtatttgagtaacagtttaagttggttggtccgtcaccgttataattgtcatcaaaagattctttcgattgagcaatttgtga 18965042  T
Q  201 ttatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgcttgatactccgaccctttgtgtatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18965041 ttatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgcttgatactccgaccctttgtgtatt 18964942  T
Q  301 gatggattgcctttg 315  Q
    |||| ||||||||||    
T  18964941 gatgaattgcctttg 18964927  T

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Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 114 - 321
Target Start/End: Original strand, 14076470 - 14076677
Alignment:
Q  114 gtgtgtatttgagtaacagtttaagttggttggtccgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttga 213  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||  |||||    || | |||  |||||||||||||||||||||||||||||||    
T  14076470 gtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttga 14076569  T
Q  214 tctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgcttgatactccgaccctttgtgtattgatggattgcctt 313  Q
    | ||||||  ||||||| |||||| |||||||||||||||||||||||| |||||| ||| ||| ||||||| ||||||  |||||||||||||||||||    
T  14076570 tttggggactgagacatatacacaattgttactccctccatgttgtgataagttgccaccacttaatactccaacccttactgtattgatggattgcctt 14076669  T
Q  314 tgcttctc 321  Q
    || |||||    
T  14076670 tgtttctc 14076677  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 114 - 321
Target Start/End: Original strand, 14386498 - 14386705
Alignment:
Q  114 gtgtgtatttgagtaacagtttaagttggttggtccgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttga 213  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||  |||||    || | |||  |||||||||||||||||||||||||||||||    
T  14386498 gtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttga 14386597  T
Q  214 tctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgcttgatactccgaccctttgtgtattgatggattgcctt 313  Q
    | ||||||  ||||||| |||||| |||||||||||||||||||||||| |||||| ||| ||| ||||||| ||||||  |||||||||||||||||||    
T  14386598 tttggggactgagacatatacacaattgttactccctccatgttgtgataagttgccaccacttaatactccaacccttactgtattgatggattgcctt 14386697  T
Q  314 tgcttctc 321  Q
    || |||||    
T  14386698 tgtttctc 14386705  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 1986215 - 1986100
Alignment:
Q  149 cgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactcc 248  Q
    |||||||| |||||||||||    |||| |||| |  |||| ||| |||| ||||||||||||||| ||||||  |||| || |||||||||||| ||||    
T  1986215 cgtcaccgatataattgtcatttgaagaatcttacagttgaacaacttgtaattatctcacttgatttggggacagagagatatacacagttgttgctcc 1986116  T
Q  249 ctccatgttgtgatga 264  Q
    ||| || |||||||||    
T  1986115 ctcgatattgtgatga 1986100  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 13417147 - 13417071
Alignment:
Q  185 attgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtga 261  Q
    ||||| |||||||||||||||||  ||||  ||||||  ||||||| |||||||||||| || |||| |||||||||    
T  13417147 attgaacaatttgtgattatctcggttgagttggggactgagacatatacacagttgttgctacctcgatgttgtga 13417071  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 19351290 - 19351248
Alignment:
Q  188 gagcaatttgtgattatctcacttgatctggggatggagacat 230  Q
    ||||||||||||||||| |||||||||||||| | ||||||||    
T  19351290 gagcaatttgtgattatttcacttgatctgggtacggagacat 19351248  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 16839604 - 16839560
Alignment:
Q  186 ttgagcaatttgtgattatctcacttgatctggggatggagacat 230  Q
    ||||||||||||||||||| ||||||||| |||| | ||||||||    
T  16839604 ttgagcaatttgtgattatttcacttgatttgggcacggagacat 16839560  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 6921573 - 6921495
Alignment:
Q  186 ttgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatga 264  Q
    |||| ||||||||||| |||||||||||| ||||||  ||||||| |||||| ||||| ||||||| ||||||||||||    
T  6921573 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatga 6921495  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 20770449 - 20770575
Alignment:
Q  138 gttggttggtccgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacaca 237  Q
    ||||||||||| |||| |||||||||||||  || || | ||||   ||  ||||||||||||| ||||| |||||| ||| ||  |||||||  | |||    
T  20770449 gttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagcaatttgtgatcatctcccttgatttggcgaaagagacatacaaaca 20770548  T
Q  238 gttgttactccctccatgttgtgatga 264  Q
    |||||||||||||| ||||||||||||    
T  20770549 gttgttactccctcaatgttgtgatga 20770575  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 6954736 - 6954664
Alignment:
Q  192 aatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatga 264  Q
    |||||||||| |||||||||||| || |||  ||||||| |||||||||||| ||||| | ||||||||||||    
T  6954736 aatttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctcccccgatgttgtgatga 6954664  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 6943214 - 6943099
Alignment:
Q  149 cgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactcc 248  Q
    |||||||| |||||||||||    |||| |||| |  |||| ||||| ||||| |||||||||||| ||||||  ||||||| |||| | ||||| ||||    
T  6943214 cgtcaccgatataattgtcatttgaagaatcttacagttgaacaattcgtgatgatctcacttgatttggggacagagacatatacaaaattgttgctcc 6943115  T
Q  249 ctccatgttgtgatga 264  Q
    ||| ||||||||||||    
T  6943114 ctcaatgttgtgatga 6943099  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 6948103 - 6948025
Alignment:
Q  186 ttgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatga 264  Q
    |||| ||| ||||||| |||||||||||| ||||||  |||| || ||||| |||||| ||||||| ||||||||||||    
T  6948103 ttgaacaacttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatga 6948025  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 6935436 - 6935363
Alignment:
Q  191 caatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatga 264  Q
    ||||| ||||| |||||||||||| ||||||  ||||||| |||| | ||||| ||||||| ||||||||||||    
T  6935436 caattcgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcgatgttgtgatga 6935363  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 53774627 - 53774763
Alignment:
Q  114 gtgtgtatttgagtaacagtttaagttggttggtccgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttga 213  Q
    |||||||| ||||||||||| | || ||||||||  | ||||||||||| ||||| || |||| |||| | |  || |||||||||||||| || |||||    
T  53774627 gtgtgtatctgagtaacagtattagctggttggtttgccaccgttataaatgtcaacagaagaatcttacaaccgaacaatttgtgattatttcgcttga 53774726  T
Q  214 tctggggatggagacatttacacagttgttactccct 250  Q
    | ||| ||  ||||||| ||||||||||  |||||||    
T  53774727 tttggagacagagacatatacacagttgcaactccct 53774763  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 53774527 - 53774567
Alignment:
Q  17 aaagttttcactttgggtgttaatatttggaaagatattca 57  Q
    ||||||||||||||||||| || |||||||| |||||||||    
T  53774527 aaagttttcactttgggtgatagtatttggagagatattca 53774567  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 20975220 - 20975273
Alignment:
Q  13 ggtaaaagttttcactttgggtgttaatatttggaaagatattcagagttttcc 66  Q
    ||||||||||||||||||||| |  |||||||||| | ||||||| ||||||||    
T  20975220 ggtaaaagttttcactttgggcgaaaatatttggagaaatattcaaagttttcc 20975273  T

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