View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_low_16 (Length: 290)
Name: NF17025_low_16
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 24571597 - 24571349
Alignment:
| Q |
18 |
atattcaatgaaaggtaaaattcgatctatctgtcnnnnnnnnn-cttaagcattccaattgcaacaatagtgaattgattaataaaatgaccaccatta |
116 |
Q |
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| T |
24571597 |
atattcaatgaaaggtaaaattcgatctatctgtcaaaagaaaaacttaagcattccaattgcaacaatagtgaattgattaataaaatgaccaccatta |
24571498 |
T |
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| Q |
117 |
gggaagacatcataatgtttctgcacttaaactttttgttttctgatacgaattggaatcaaaactcacactaa----------tattgtgatgcataaa |
206 |
Q |
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| T |
24571497 |
ggaaagacatcataatgtttctccacttaaactttttgttttgtgttacgaattggaatcaaaactcacaccaatattttaatttattgtgatgcat-aa |
24571399 |
T |
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| Q |
207 |
agcaatgttagtagcaaaattagaaaacaaaccaaagataaaggagaagaag |
258 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24571398 |
agcaatgttagtagc--aattagaaaacaaaccaaagataaaggagaagaag |
24571349 |
T |
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