View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17025_low_20 (Length: 273)

Name: NF17025_low_20
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17025_low_20
NF17025_low_20
[»] chr6 (1 HSPs)
chr6 (5-268)||(10201214-10201477)
[»] chr2 (3 HSPs)
chr2 (164-268)||(2453674-2453778)
chr2 (177-268)||(21847026-21847117)
chr2 (213-268)||(21098704-21098759)
[»] chr1 (2 HSPs)
chr1 (166-273)||(973072-973179)
chr1 (215-267)||(16571996-16572048)
[»] chr4 (2 HSPs)
chr4 (178-266)||(25162540-25162628)
chr4 (128-268)||(21212251-21212394)
[»] chr8 (3 HSPs)
chr8 (211-268)||(10795243-10795300)
chr8 (164-216)||(30910748-30910800)
chr8 (186-262)||(15748817-15748894)
[»] scaffold0039 (1 HSPs)
scaffold0039 (178-273)||(32779-32874)
[»] chr7 (1 HSPs)
chr7 (166-273)||(19706569-19706676)
[»] scaffold0010 (1 HSPs)
scaffold0010 (184-273)||(134348-134437)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 10201214 - 10201477
Alignment:
Q  5 atatgacgagaacaacagtaagctagagagggagtgaatagattatcttcatttatgaaaactttttccgaaagcatggttttacaaaactcttttgaga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |    
T  10201214 atatgacgagaacaacagtaagctagagagggagtgaatagattatcctcatttatgaaaacttttcccgaaagcgtggttttacaaaactcttttgaaa 10201313  T
Q  105 ttgtatgatatatcaaattacgtaatagcttcaacgataatacaataagctatgatacaacaattcaagttagaacgaaaaattcacacttgaattgtta 204  Q
    ||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10201314 ttgtatgttatattgaattacgtaatagcttcaatgataatacaataagctatgatacaacaattcaaattagaacgaaaaattcacacttgaattgtta 10201413  T
Q  205 ttaactaatcaattattaatacataatataatccacaaaaccaataactatatcaaaccaaacc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10201414 ttaactaatcaattattaatacataatataatccacaaaaccaataactatatcaaaccaaacc 10201477  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 2453778 - 2453674
Alignment:
Q  164 acaattcaagttagaacgaaaaattcacacttgaattgttattaactaatcaattattaatacataatataatccacaaaaccaataactatatcaaacc 263  Q
    ||||||||| || | |||| | |||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||||    
T  2453778 acaattcaactttgtacgagagattcacacttgacttgttattaaccaatcaactattaatacacaatataatccacaaaaccaataacaatatcaaacc 2453679  T
Q  264 aaacc 268  Q
    |||||    
T  2453678 aaacc 2453674  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 21847026 - 21847117
Alignment:
Q  177 gaacgaaaaattcacacttgaattgttattaactaatcaattattaatacataatataatccacaaaaccaataactatatcaaaccaaacc 268  Q
    |||||| |||||||||||| ||||| | || ||| |||||||||| ||||| |||||||||||||||||||| ||| || |||| |||||||    
T  21847026 gaacgagaaattcacacttaaattgatgttgacttatcaattattgatacacaatataatccacaaaaccaacaacaatgtcaacccaaacc 21847117  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 21098759 - 21098704
Alignment:
Q  213 tcaattattaatacataatataatccacaaaaccaataactatatcaaaccaaacc 268  Q
    |||||||| |||||| || |||||||| ||||||||||| ||| ||||||||||||    
T  21098759 tcaattatcaatacacaaaataatccataaaaccaataattatgtcaaaccaaacc 21098704  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 973072 - 973179
Alignment:
Q  166 aattcaagttagaacgaaaaattcacacttgaattgttattaactaatcaattattaatacataatataatccacaaaaccaataactatatcaaaccaa 265  Q
    ||||||| || ||| || ||||||||| |||||||||||||||  ||| ||||| ||||||| |||||||||||  ||||||||||| ||||||||||||    
T  973072 aattcaactttgaatgacaaattcacatttgaattgttattaatcaataaattactaatacacaatataatccatgaaaccaataacaatatcaaaccaa 973171  T
Q  266 accaaacc 273  Q
    ||||||||    
T  973172 accaaacc 973179  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 16571996 - 16572048
Alignment:
Q  215 aattattaatacataatataatccacaaaaccaataactatatcaaaccaaac 267  Q
    ||||||||||||| | |||||||||||||||||| |||||| |||||||||||    
T  16571996 aattattaatacacactataatccacaaaaccaaaaactatttcaaaccaaac 16572048  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 25162628 - 25162540
Alignment:
Q  178 aacgaaaaattcacacttgaattgttattaactaatcaattattaatacataatataatccacaaaaccaataactatatcaaaccaaa 266  Q
    ||||| |||||||||||| ||||  ||||||| || |||||||||||||| ||||||||| |||||||||| ||| |||||||||||||    
T  25162628 aacgagaaattcacactttaattactattaaccaaacaattattaatacaaaatataatctacaaaaccaaaaacaatatcaaaccaaa 25162540  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 268
Target Start/End: Complemental strand, 21212394 - 21212251
Alignment:
Q  128 aatagcttcaacgataatacaataagctatgatacaa---caattcaagttagaacgaaaaattcacacttgaattgttattaactaatcaattattaat 224  Q
    ||||||||||| ||||||| ||||||| |||  ||||   |||||||| || ||| ||  ||||||| ||| || ||| ||| |  ||||||||||||||    
T  21212394 aatagcttcaatgataatagaataagcaatggcacaatagcaattcaaattggaatgaggaattcactcttaaactgtaatttatcaatcaattattaat 21212295  T
Q  225 acataatataatccacaaaaccaataactatatcaaaccaaacc 268  Q
    ||| | ||   |||||||||||||||||||| | ||||||||||    
T  21212294 acacattaacttccacaaaaccaataactattttaaaccaaacc 21212251  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 10795300 - 10795243
Alignment:
Q  211 aatcaattattaatacataatataatccacaaaaccaataactatatcaaaccaaacc 268  Q
    ||||||||||||||| | ||||||||||||| |||||||||| |||||||||||||||    
T  10795300 aatcaattattaatatacaatataatccacataaccaataacaatatcaaaccaaacc 10795243  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 30910800 - 30910748
Alignment:
Q  164 acaattcaagttagaacgaaaaattcacacttgaattgttattaactaatcaa 216  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  30910800 acaattcaatttagaacgagaaattcacacttgaattgttattaaccaatcaa 30910748  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 15748817 - 15748894
Alignment:
Q  186 attcacacttgaattgttattaactaatcaattattaatacataatat-aatccacaaaaccaataactatatcaaac 262  Q
    |||||||||||||||| | |||||   ||||||||||||||| ||||| |||||||||||| || ||| |||||||||    
T  15748817 attcacacttgaattgatgttaacctgtcaattattaatacacaatataaatccacaaaactaacaacaatatcaaac 15748894  T

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Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 32874 - 32779
Alignment:
Q  178 aacgaaaaattcacacttgaattgtta-ttaactaatcaattattaatacataatataatccacaaaaccaataactatatcaaaccaaaccaaacc 273  Q
    ||||| |||||| |||||||||| ||  ||||| |||||||||  |||||| || |||||||||||||||||||| ||| |||||||||||| ||||    
T  32874 aacgagaaattctcacttgaattatttcttaac-aatcaattaacaatacacaacataatccacaaaaccaataattatttcaaaccaaacctaacc 32779  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 19706569 - 19706676
Alignment:
Q  166 aattcaagttagaacgaaaaattcacacttgaattgtta-ttaactaatcaattattaatacataatataatccacaaaaccaataactatatcaaacca 264  Q
    |||||||||  ||| || ||||||||||||||||| ||| ||||| |||||||||  |||||| || | ||||||||||| ||| |||||| |||||| |    
T  19706569 aattcaagtaggaatgagaaattcacacttgaattattacttaac-aatcaattaacaatacacaacaaaatccacaaaagcaacaactatttcaaacaa 19706667  T
Q  265 aaccaaacc 273  Q
    |||| ||||    
T  19706668 aacctaacc 19706676  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 134348 - 134437
Alignment:
Q  184 aaattcacacttgaattgtta-ttaactaatcaattattaatacataatataatccacaaaaccaataactatatcaaaccaaaccaaacc 273  Q
    ||||||||| ||||||| ||| ||||| |||||| ||  ||| || || ||||||||||||||||||||||||  ||||||||||| ||||    
T  134348 aaattcacagttgaattattacttaac-aatcaagtaacaatgcacaacataatccacaaaaccaataactattgcaaaccaaacctaacc 134437  T

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