View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_low_21 (Length: 272)
Name: NF17025_low_21
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 76 - 256
Target Start/End: Original strand, 27944350 - 27944536
Alignment:
| Q |
76 |
aactaattccacgtgtcctgcatctatttgttatcactcatt----attatccctttatttc-gtaatcgtaaccactatataaa-actcactcagcacc |
169 |
Q |
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| T |
27944350 |
aactaattccacgtgtcatgcatctatttgttatcactcattcattattatccccttttttcagtaatcgtaaccactatataaagactcactcagcacc |
27944449 |
T |
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| Q |
170 |
caacttaacatatcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgttctctgtccttttcct |
256 |
Q |
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| T |
27944450 |
caacttaacatatcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgttctctgtccttttcct |
27944536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 27550637 - 27550502
Alignment:
| Q |
18 |
agaaaaatcctagctatcagttttcgctaactgtcaactaaattcaaatataacagaaaactaattccacgtgtcctgcatctatttgttatcactcatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27550637 |
agaaaaatcctagctatcagttttcgctaactgtcaactaaattcaaatataacagaaaactaattccacgtgtcctgcatctatttgttatcactcatt |
27550538 |
T |
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| Q |
118 |
attatccctttatttcgtaatcgtaaccactatataaa |
155 |
Q |
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| T |
27550537 |
attatccctttatt--gtaatcgtaaccactatataaa |
27550502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 27550308 - 27550192
Alignment:
| Q |
147 |
ctatataaaactcactcagcacccaacttaacatatcataa-------cataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctg |
239 |
Q |
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| T |
27550308 |
ctatataaaactcactcagcactcaacttaacatatcataagtcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctg |
27550209 |
T |
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| Q |
240 |
ttctctgtccttttcct |
256 |
Q |
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| T |
27550208 |
ttctctgtccttttcct |
27550192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 27435902 - 27435976
Alignment:
| Q |
134 |
gtaatcgtaaccactatataaa-actcactcagcacccaacttaacatatcataacataccatactacgatcaag |
207 |
Q |
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| T |
27435902 |
gtaatcgtaaccactatataaagactcactcagcacccaacttaacatatcataacataccatactaccatcaag |
27435976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 27436005 - 27436053
Alignment:
| Q |
217 |
atcgtaacaagactctcatgctgttctctgtccttttcctcttcatctc |
265 |
Q |
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|||||||| | ||| ||||||||||||||||||||||||| ||| |||| |
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| T |
27436005 |
atcgtaaccaaactttcatgctgttctctgtccttttcctgttcttctc |
27436053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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