View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17025_low_25 (Length: 250)

Name: NF17025_low_25
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17025_low_25
NF17025_low_25
[»] chr5 (5 HSPs)
chr5 (1-240)||(15262966-15263205)
chr5 (1-129)||(15287332-15287460)
chr5 (5-124)||(15284459-15284578)
chr5 (43-129)||(15256661-15256747)
chr5 (42-129)||(15265186-15265273)
[»] chr3 (1 HSPs)
chr3 (2-124)||(51383641-51383763)
[»] chr8 (1 HSPs)
chr8 (5-123)||(44247983-44248101)
[»] chr7 (2 HSPs)
chr7 (33-124)||(11806900-11806991)
chr7 (47-99)||(48391667-48391719)
[»] chr6 (2 HSPs)
chr6 (50-95)||(6554179-6554224)
chr6 (50-100)||(6543659-6543709)
[»] chr2 (1 HSPs)
chr2 (50-108)||(4835980-4836038)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15262966 - 15263205
Alignment:
Q  1 ttacatgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttcattggtgtttgccaggacctatagatacttggaatgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15262966 ttacatgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttcattggtgtttgcctggacctatagatacttggaatgag 15263065  T
Q  101 atttttctagagatgatgaagaagtgggattggaagggacaaccaaggagtgaagagtgagacattcattcctcttagcttgttaatttattaatcaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15263066 atttttctagagatgatgaagaagtgggattggaagggacaaccaaggagtgaagagtgagacattcattcctcttagcttgttaatttattaatctaat 15263165  T
Q  201 atttccatagaaagattatgtttattatgttcattctctg 240  Q
     |||||||||||||||||||||||||||||||||||||||    
T  15263166 ctttccatagaaagattatgtttattatgttcattctctg 15263205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 15287460 - 15287332
Alignment:
Q  1 ttacatgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttcattggtgtttgccaggacctatagatacttggaatgag 100  Q
    |||||||||||||||||| || || || || |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15287460 ttacatgaatccttttccatttgcaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgag 15287361  T
Q  101 atttttctagagatgatgaagaagtggga 129  Q
    |||||| ||||||||||||||| ||||||    
T  15287360 atttttgtagagatgatgaagaggtggga 15287332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 15284459 - 15284578
Alignment:
Q  5 atgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttcattggtgtttgccaggacctatagatacttggaatgagattt 104  Q
    |||||||||||||| || || || || |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15284459 atgaatccttttccatttgcaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgagattt 15284558  T
Q  105 ttctagagatgatgaagaag 124  Q
    |  | |||||||||||||||    
T  15284559 tgttggagatgatgaagaag 15284578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 15256747 - 15256661
Alignment:
Q  43 tgtgcaaaatgattgtgttcattggtgtttgccaggacctatagatacttggaatgagatttttctagagatgatgaagaagtggga 129  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||||| |||||    
T  15256747 tgtgcagaatgattgtgttcattggtgtttgcctggacctatagacacatggaatgagatttttctggagattatgaagaaatggga 15256661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 15265273 - 15265186
Alignment:
Q  42 atgtgcaaaatgattgtgttcattggtgtttgccaggacctatagatacttggaatgagatttttctagagatgatgaagaagtggga 129  Q
    |||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||| |||| || || ||||| |||||    
T  15265273 atgtgcaaaatgattgtgttcattggtgtttgcctggaccaattgatacatggaatgagatatttttagaaattataaagaaatggga 15265186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 51383641 - 51383763
Alignment:
Q  2 tacatgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttcattggtgtttgccaggacctatagatacttggaatgaga 101  Q
    ||||||||||||||||| || || || ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51383641 tacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgccaggacctatagacacttggaatgaga 51383740  T
Q  102 tttttctagagatgatgaagaag 124  Q
    ||||| | ||||| |||||||||    
T  51383741 tttttttggagatcatgaagaag 51383763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 44248101 - 44247983
Alignment:
Q  5 atgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttcattggtgtttgccaggacctatagatacttggaatgagattt 104  Q
    |||||||||||||| || || ||  | ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  44248101 atgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatatttggaatgagattt 44248002  T
Q  105 ttctagagatgatgaagaa 123  Q
    || |  |||||||||||||    
T  44248001 ttttgcagatgatgaagaa 44247983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 11806991 - 11806900
Alignment:
Q  33 ttccaaagtatgtgcaaaatgattgtgttcattggtgtttgccaggacctatagatacttggaatgagatttttctagagatgatgaagaag 124  Q
    |||||||| |||| ||||| ||||||  ||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  11806991 ttccaaagaatgtacaaaacgattgtactcattggtgcttgccaggacctattgatacttggaatgagatttttttggagatgatgaagaag 11806900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 48391667 - 48391719
Alignment:
Q  47 caaaatgattgtgttcattggtgtttgccaggacctatagatacttggaatga 99  Q
    |||||||||||| | ||||||| |||||||||||| || ||| ||||||||||    
T  48391667 caaaatgattgtttacattggtatttgccaggaccaatcgattcttggaatga 48391719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 6554224 - 6554179
Alignment:
Q  50 aatgattgtgttcattggtgtttgccaggacctatagatacttgga 95  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  6554224 aatgattgtgttcattggtgtttgccagggcctatagatacatgga 6554179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 6543709 - 6543659
Alignment:
Q  50 aatgattgtgttcattggtgtttgccaggacctatagatacttggaatgag 100  Q
    ||||||||||||||||||||||| || |||||| | ||||| |||||||||    
T  6543709 aatgattgtgttcattggtgtttacctggacctgttgatacatggaatgag 6543659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 4836038 - 4835980
Alignment:
Q  50 aatgattgtgttcattggtgtttgccaggacctatagatacttggaatgagatttttct 108  Q
    ||||||||||||||||||||| ||||||| ||| | ||||||   ||||||||||||||    
T  4836038 aatgattgtgttcattggtgtatgccagggcctgttgatactattaatgagatttttct 4835980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University