View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17025_low_27 (Length: 246)

Name: NF17025_low_27
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17025_low_27
NF17025_low_27
[»] chr5 (6 HSPs)
chr5 (18-231)||(22648506-22648710)
chr5 (18-74)||(26718866-26718922)
chr5 (18-74)||(26988610-26988666)
chr5 (18-74)||(27530621-27530677)
chr5 (26-74)||(35080689-35080737)
chr5 (26-74)||(10407596-10407644)
[»] chr1 (3 HSPs)
chr1 (26-72)||(45758642-45758688)
chr1 (27-74)||(39134639-39134686)
chr1 (18-71)||(6221814-6221867)
[»] chr2 (4 HSPs)
chr2 (26-71)||(12133959-12134004)
chr2 (24-68)||(7742055-7742099)
chr2 (27-74)||(16227286-16227333)
chr2 (18-72)||(11952511-11952565)
[»] chr4 (4 HSPs)
chr4 (25-74)||(40217369-40217418)
chr4 (25-74)||(51691839-51691888)
chr4 (18-72)||(4167843-4167897)
chr4 (18-71)||(27112161-27112214)
[»] scaffold0007 (1 HSPs)
scaffold0007 (18-74)||(230781-230837)
[»] chr7 (5 HSPs)
chr7 (18-74)||(2611180-2611236)
chr7 (18-74)||(12419414-12419470)
chr7 (25-72)||(12981458-12981505)
chr7 (26-77)||(23020401-23020451)
chr7 (18-72)||(38971379-38971433)
[»] chr8 (3 HSPs)
chr8 (27-74)||(39332328-39332375)
chr8 (18-72)||(11290316-11290370)
chr8 (28-74)||(38009071-38009117)
[»] chr6 (2 HSPs)
chr6 (24-74)||(20611924-20611974)
chr6 (18-71)||(2477508-2477561)
[»] scaffold0012 (1 HSPs)
scaffold0012 (18-74)||(182442-182498)
[»] chr3 (2 HSPs)
chr3 (27-71)||(23641240-23641284)
chr3 (18-74)||(36179477-36179533)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 22648710 - 22648506
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccctctgatacatccatatatatatgcttggtgcaataagattcaca 117  Q
    ||||||||| |||||||||||||||| | ||||||| ||||||||||||||| ||||  |||||||||||||      ||||||||||||||||||||||    
T  22648710 attacaggcttcttttcacttacagagc-gagtctccggattcgtaggaacgaccct--gatacatccatat------gcttggtgcaataagattcaca 22648620  T
Q  118 tgtcatacatatatttgtctagggacctcaaatccatataaaagattaagtttccaactcacatgctgtttaaagggacatgcaatatggtgtttcactc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22648619 tgtcatacatatatttgtctagggacctcaaatccatataaaagattaagtttccaactcacatgctgtttaaagggacatgcaatatggtgtttcactc 22648520  T
Q  218 tcatttttattcat 231  Q
    ||||||||||||||    
T  22648519 tcatttttattcat 22648506  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 26718922 - 26718866
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    ||||| || ||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  26718922 attacgggtctcttttcacttacagaaccgagcctccggattcataggaacggccct 26718866  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 26988666 - 26988610
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    ||||| || ||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  26988666 attacgggtctcttttcacttacagaaccgagcctccggattcataggaacggccct 26988610  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 27530621 - 27530677
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    ||||| |||||||||||||||| ||||||||| ||||  ||||||||||||||||||    
T  27530621 attacgggcctcttttcacttatagaaccgagcctctaaattcgtaggaacggccct 27530677  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 35080737 - 35080689
Alignment:
Q  26 cctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    ||||||||||||||||||  |||| |||| |||||||||||||||||||    
T  35080737 cctcttttcacttacagagtcgagcctctagattcgtaggaacggccct 35080689  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 10407596 - 10407644
Alignment:
Q  26 cctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    |||||||||||||| ||||||||  |||| |||||||||||||| ||||    
T  10407596 cctcttttcacttatagaaccgaacctctagattcgtaggaacgaccct 10407644  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 45758642 - 45758688
Alignment:
Q  26 cctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 72  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  45758642 cctcttttcacttacagagccgagcctctggattcgtaggaacggcc 45758688  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 39134686 - 39134639
Alignment:
Q  27 ctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    |||||||||||||| || ||||| ||| ||||||||||||||||||||    
T  39134686 ctcttttcacttacggagccgagcctccggattcgtaggaacggccct 39134639  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 6221814 - 6221867
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggc 71  Q
    ||||| || ||||||||| |||||||||||||||||  ||||||||| ||||||    
T  6221814 attacgggtctcttttcatttacagaaccgagtctccagattcgtagaaacggc 6221867  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 12134004 - 12133959
Alignment:
Q  26 cctcttttcacttacagaaccgagtctctggattcgtaggaacggc 71  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  12134004 cctcttttcacttacagaaccgagcctctggattcgtaggtacggc 12133959  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 7742099 - 7742055
Alignment:
Q  24 ggcctcttttcacttacagaaccgagtctctggattcgtaggaac 68  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||    
T  7742099 ggcctcttttcacttacagaaccgaacctccggattcgtaggaac 7742055  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 16227333 - 16227286
Alignment:
Q  27 ctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    ||||||||||||||||||| ||| ||| | ||||||||||||||||||    
T  16227333 ctcttttcacttacagaactgagcctccgaattcgtaggaacggccct 16227286  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11952565 - 11952511
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 72  Q
    ||||| || ||||||||||||||||||||||| ||   |||||||||||||||||    
T  11952565 attacgggtctcttttcacttacagaaccgagccttcagattcgtaggaacggcc 11952511  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 40217369 - 40217418
Alignment:
Q  25 gcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||| ||||||    
T  40217369 gcctcttttcacttacaaaaccgagcctctgaattcgtaggaatggccct 40217418  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 51691888 - 51691839
Alignment:
Q  25 gcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    |||||||||||||| |||| ||||| ||| ||||||||||||||||||||    
T  51691888 gcctcttttcacttgcagagccgagcctccggattcgtaggaacggccct 51691839  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 4167897 - 4167843
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 72  Q
    ||||| |||||||||||||||||| || |||| ||| ||||||||| ||||||||    
T  4167897 attacgggcctcttttcacttacaaaatcgagcctccggattcgtacgaacggcc 4167843  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 27112161 - 27112214
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggc 71  Q
    ||||| || ||||||||||||||||||||||| |||  |||| |||||||||||    
T  27112161 attacgggtctcttttcacttacagaaccgagcctccagatttgtaggaacggc 27112214  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 230837 - 230781
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    ||||| ||||||||||| |||||||| |||||  || ||||||||||||||||||||    
T  230837 attacgggcctcttttcccttacagatccgagcttccggattcgtaggaacggccct 230781  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 2611236 - 2611180
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    |||||| |||||||||||||| |||||||||| ||| |||||| |||||||| ||||    
T  2611236 attacaagcctcttttcacttgcagaaccgagcctccggattcataggaacgaccct 2611180  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 12419470 - 12419414
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    ||||| |||||||||||||||||| | ||||| ||| |||||| |||||||||||||    
T  12419470 attacgggcctcttttcacttacaaagccgagcctccggattcataggaacggccct 12419414  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 12981458 - 12981505
Alignment:
Q  25 gcctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 72  Q
    |||||||||||| |||||||||||  ||| ||||||||||||||||||    
T  12981458 gcctcttttcacctacagaaccgaacctccggattcgtaggaacggcc 12981505  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 23020451 - 23020401
Alignment:
Q  26 cctcttttcacttacagaaccgagtctctggattcgtaggaacggccctctg 77  Q
    |||||||||||||||||||||| | |||  ||||||||||||||||||||||    
T  23020451 cctcttttcacttacagaaccg-gcctccagattcgtaggaacggccctctg 23020401  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 38971379 - 38971433
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 72  Q
    ||||| || ||||||||||||||| | |||||||||| ||||||||| |||||||    
T  38971379 attacgggtctcttttcacttacaaagccgagtctctagattcgtagaaacggcc 38971433  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 39332375 - 39332328
Alignment:
Q  27 ctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    |||||||||| |||||||||||| ||| | ||||||||||||||||||    
T  39332375 ctcttttcacctacagaaccgagcctccgaattcgtaggaacggccct 39332328  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 11290316 - 11290370
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 72  Q
    |||||| | ||||||||||||||| |  |||||||||| ||||||||||||||||    
T  11290316 attacatgtctcttttcacttacaaagtcgagtctctgaattcgtaggaacggcc 11290370  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 38009117 - 38009071
Alignment:
Q  28 tcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    |||||||| ||||||||||||| ||| |||||| |||||||||||||    
T  38009117 tcttttcagttacagaaccgagcctccggattcataggaacggccct 38009071  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 20611924 - 20611974
Alignment:
Q  24 ggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    |||||||||||||||||||| ||||| ||| | ||||||||||||| ||||    
T  20611924 ggcctcttttcacttacagagccgagcctccgaattcgtaggaacgaccct 20611974  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 2477561 - 2477508
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggc 71  Q
    ||||| || ||||||||||||||||||||||| |||  |||| |||||||||||    
T  2477561 attacgggtctcttttcacttacagaaccgagcctccagatttgtaggaacggc 2477508  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 182442 - 182498
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    ||||| |||||| |||||||| ||| |||||| ||||  ||||||||||||||||||    
T  182442 attacgggcctcatttcactttcagcaccgagcctctaaattcgtaggaacggccct 182498  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 23641284 - 23641240
Alignment:
Q  27 ctcttttcacttacagaaccgagtctctggattcgtaggaacggc 71  Q
    |||||||||| |||||||||||| |||  ||||||||||||||||    
T  23641284 ctcttttcacctacagaaccgagcctccagattcgtaggaacggc 23641240  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 36179533 - 36179477
Alignment:
Q  18 attacaggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 74  Q
    ||||| ||||||||||||||||  | ||| || ||| ||||||||||||||||||||    
T  36179533 attacgggcctcttttcacttatgggaccaagcctccggattcgtaggaacggccct 36179477  T

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