View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_low_3 (Length: 610)
Name: NF17025_low_3
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 5570857 - 5570603
Alignment:
| Q |
18 |
ataaggaattccaaattacagttatcaacttttgtaagaacttcacgtgcattattacattcaagggagatgcgatgctaccccaatgcctagtgttaag |
117 |
Q |
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| T |
5570857 |
ataaggacttccaaattacagttatcaacttttgtaagaacttcacgtgcattattacattcaagggagatgc-----taccccaatgcctagtgttaag |
5570763 |
T |
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| Q |
118 |
aaggcaagttcactagtttatttgctgcacctgtttcggtgaattaagagcaactagaacggagataagagt-aaggtgaaataccaatacagttgcaca |
216 |
Q |
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| T |
5570762 |
aaggcaagttcactagtttatttgctgcacctgtttcggtgaattaagagcaactagaacggagataagagtaaaggtgaaataccaatacagttgcaca |
5570663 |
T |
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| Q |
217 |
tgagacaacattttaacaaagaaacagcgactattcaaataaaaagcgaaatttttcctt |
276 |
Q |
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| T |
5570662 |
tgagacaacattttaacaaagaaacagcgactattcaaataaaaagcgaaatttttcctt |
5570603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 313 - 560
Target Start/End: Complemental strand, 5570605 - 5570363
Alignment:
| Q |
313 |
ctttttaaaatttgcattcaaaattaatctggagtttgaattcagaactagtcttt-atacggtgaattttctggttaaatactcatatagcttccatag |
411 |
Q |
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| T |
5570605 |
ctttttaaaatttgcattcaaaattaatctggaatttgaattcagaactagtcttttatacggtgaattttctggttaaatactcatat------catag |
5570512 |
T |
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| Q |
412 |
taacccataaagaataccaagcctcaaataaagggagagctgagtccattgtaacttgtgggggtttgtaatgtatttagttttagttcagtactgtgtt |
511 |
Q |
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| T |
5570511 |
taacccctaaagaataccaagcctcaaataaagggagagctgagtccattgtaacttgtgggggtttgtaatgtatttagttttagttcagtactgtgtt |
5570412 |
T |
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| Q |
512 |
atcatcaacatcatcatcccttatttatagtaggggggatgaaaaatcc |
560 |
Q |
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| T |
5570411 |
atcatcaacatcatcatcccttatttatagtaggggggatgaaaaatcc |
5570363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 472 - 530
Target Start/End: Complemental strand, 27755051 - 27754993
Alignment:
| Q |
472 |
ggggtttgtaatgtatttagttttagttcagtactgtgttatcatcaacatcatcatcc |
530 |
Q |
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| T |
27755051 |
ggggtttgtaatgtatttagttttagttcactactgtcttatcatcaccatcatcatcc |
27754993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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