View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_low_30 (Length: 236)
Name: NF17025_low_30
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 10201535 - 10201753
Alignment:
| Q |
3 |
aagttaatttctaatatgaaaggtgattgacttgatgaatgcgttgatctaaacaatgttcttggaaattaaattttaaaaatgattcattcacaaagca |
102 |
Q |
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| T |
10201535 |
aagttaatttctaatatgaaaggtgattgacttgatgaatgtgttgatctaaacaatgttcttggaaattaaattttaaaaatgattcgatcacaaagca |
10201634 |
T |
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| Q |
103 |
tactgtaattaacctaatatatcaccatcatcgtatatcaaagtaaatttgcggaaattaaagataaaggaaaaatataacaccaaatttacagaggttc |
202 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
10201635 |
taccgtaattaacctaatatatcaccatcatcgtttatcaaagtaaatttgcggaaattaaagataaaggaaaaatacaacacttgatttacagaggttc |
10201734 |
T |
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| Q |
203 |
ccttaatcgtcctcgttat |
221 |
Q |
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||||||||||||||||||| |
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| T |
10201735 |
ccttaatcgtcctcgttat |
10201753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 28091830 - 28091989
Alignment:
| Q |
1 |
acaagttaatttctaatatgaaaggtgattgacttgatgaatgcgttgatctaaacaatgttcttggaaattaaattttaaaaatgattcattcacaaag |
100 |
Q |
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| T |
28091830 |
acaagttaatctctaatatgaaaggtgattgaattaataaatgtattaatatcaacaatgttgttgaaaattaggttttagaaattatttaatcacaaaa |
28091929 |
T |
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| Q |
101 |
catactgtaattaacctaatatatcaccatcatcgtatatcaaagtaaatttgcggaaattaaaga |
166 |
Q |
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| T |
28091930 |
catatagtaattaacctaat------tcatcattgtatgtcaaagtaaatttgcagaaattaaaga |
28091989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 21212118 - 21212021
Alignment:
| Q |
76 |
ttttaaaaatgattcattcacaaagcatactgtaattaacctaatatatcaccatcatcgtatatcaaagtaaatttgcggaaattaaagataaaggaaa |
175 |
Q |
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|||||||||| || || |||||||||||| |||||||||||| |||| |||||| |||||||||||||||||| ||||||||||| ||||||| |
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| T |
21212118 |
ttttaaaaattatccaatcacaaagcatatgacaattaacctaatccatcaacatcat---atatcaaagtaaatttgcagaaattaaagagtaaggaaa |
21212022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21212183 - 21212146
Alignment:
| Q |
1 |
acaagttaatttctaatatgaaaggtgattgacttgat |
38 |
Q |
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|||||||||| ||||||||||||||||||||| ||||| |
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| T |
21212183 |
acaagttaatctctaatatgaaaggtgattgaattgat |
21212146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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