View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_low_31 (Length: 233)
Name: NF17025_low_31
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 18965924 - 18965726
Alignment:
| Q |
20 |
cgtaaaaccccgcctccgtccaatgtgttggaatcaccgcctccgtccaatgcgttggaagcgctacctcagccaaatccctcggtattggcggtaatac |
119 |
Q |
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| T |
18965924 |
cgtaaaaccccgcctccatccaatgtgttggaatcaccgcctccgtccaatgtatccgcatttctgtctcagccaaatccctcggtattggcggtaatcc |
18965825 |
T |
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| Q |
120 |
attccgaagaacttattatcgaaatactatcacatcttagtgtgaaatctctgatgcaacttaagagtgtgagcaagacatggaaaactatcatctctg |
218 |
Q |
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| T |
18965824 |
actccgaagaacttattatcgaaatactatcacatcttagtgtgaaatctctgatgcaacttaagtgtgtgagcaagacatggaaaaccatcatctctg |
18965726 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 20770129 - 20770177
Alignment:
| Q |
128 |
gaacttattatcgaaatactatcacatcttagtgtgaaatctctgatgc |
176 |
Q |
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| T |
20770129 |
gaacttattaccgaaatactatcacggcttaacgtgaaatctctgatgc |
20770177 |
T |
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