View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_low_4 (Length: 604)
Name: NF17025_low_4
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 340
Target Start/End: Original strand, 14259716 - 14260038
Alignment:
| Q |
23 |
ctctttgtcggattataaacttataaaatctatatttcatgtaatagtgacatgaaaatgtttttggtatattttagttatcgattcaagtgtattctcc |
122 |
Q |
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| T |
14259716 |
ctctttgtcagattataagcttatgaaatctatatttcatgtaatagtgatatgaaaatgtttttggtatattttagttatcgattcaaatgtattctcc |
14259815 |
T |
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| Q |
123 |
atggtcattttgtggatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagtaatggaa--- |
219 |
Q |
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| T |
14259816 |
atgatcattttgtggatgacttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagtttttcttggaaagatcaagttatggaaagg |
14259915 |
T |
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| Q |
220 |
-atgtaattaacaaatttcacaatttcactaaaaaaggttaaaactcatagctaatgtatttaattaaatccaggga-acccacttttcagaatcacggt |
317 |
Q |
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| T |
14259916 |
taagtaattaacagatttcacaattttactaacaaaggttaagactcatatctaatgtatttaattaaattcagggatacctaccgttcagaatcacggt |
14260015 |
T |
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| Q |
318 |
aatcataccaagatgttattcaa |
340 |
Q |
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| T |
14260016 |
gcttataccaagatgttattcaa |
14260038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 14265257 - 14265447
Alignment:
| Q |
36 |
tataaacttataaaatctatatt-tcatgtaatagtgacatgaaaatgtttttggtatattttagttatcgattcaagtgtattctccatggtcattttg |
134 |
Q |
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| T |
14265257 |
tataaacttataaaatctatattctcacagaatagaaacacgaaaatgtttatggtatattt-agttatcgattcaagtgtattcttcatgaccattttg |
14265355 |
T |
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| Q |
135 |
tggatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagtaatggaaatgtaatta |
228 |
Q |
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| T |
14265356 |
tagatgacttgaccgattttatacta--tggatcttttgacaattcacgtgtggtggtttttcttggaaagatcgagttatggaaatgtaatta |
14265447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 38 - 340
Target Start/End: Complemental strand, 22146239 - 22145934
Alignment:
| Q |
38 |
taaacttataaaatctatattt-catgtaatagtgacatgaaaatgtttttggtatattttagttatcgattcaagtgtattctccatggtcattttgtg |
136 |
Q |
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| T |
22146239 |
taaacttataaaatctatattttcacggaatagtaacacgaaaatgattatggtatattt-agataccgattcaagtgtattctccatggccgttttgtg |
22146141 |
T |
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| Q |
137 |
gatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagtaatggaaatgtaattaacaaattt |
236 |
Q |
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| T |
22146140 |
gatgacttcaccgattttatactatcaggatcttctgacaatgcatgtgtggtagttttccttggaaagatcaaattatggtaaggtaattaacaaattt |
22146041 |
T |
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| Q |
237 |
cacaatttcact--aaaaaaggttaaaactcatagctaatgtatttaattaaatccaggga-acccacttttcagaatcacggtaatcataccaagatgt |
333 |
Q |
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| T |
22146040 |
cacaaatccggtaaaaaaaaaattaaaactcaaagctaatatatttaggtaaatccaggcatacctactattcaggatcacgataattataccaagatgt |
22145941 |
T |
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| Q |
334 |
tattcaa |
340 |
Q |
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| T |
22145940 |
tattcaa |
22145934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 504 - 596
Target Start/End: Complemental strand, 28537037 - 28536945
Alignment:
| Q |
504 |
agatgaagttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat |
596 |
Q |
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| T |
28537037 |
agatgaagttatggaaaatacaaatgcaatatgttcaaggaagcatttatgtctttgatcctctatttacattccatacctttatagtataat |
28536945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 510 - 596
Target Start/End: Complemental strand, 35686936 - 35686850
Alignment:
| Q |
510 |
agttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat |
596 |
Q |
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| T |
35686936 |
agttatggaaaatacaaatgcaatacgtttaaggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat |
35686850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 504 - 581
Target Start/End: Complemental strand, 7723136 - 7723059
Alignment:
| Q |
504 |
agatgaagttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccata |
581 |
Q |
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||||||||| |||||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |
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| T |
7723136 |
agatgaagtgatggaaaatatgaatgcaatatgtttaaggaaacatttatgtctttgatcctatatttatattccata |
7723059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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