View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_low_5 (Length: 563)
Name: NF17025_low_5
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 129 - 404
Target Start/End: Original strand, 6928550 - 6928825
Alignment:
| Q |
129 |
atattttgatatatttaatgatgagagatcaagctataaagcagaccagtacactgtctaattattggcattatttatcaaattcttttggatccattta |
228 |
Q |
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| T |
6928550 |
atattttgatctatttgattatgagagataaagctataaagcaaatcaggacactttccaattattgctattatttatcaaattcttttgggtccattta |
6928649 |
T |
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| Q |
229 |
gaacagacaaagcatagatagaataacaggatgttatttgaaccaatatgtcaatgagtaaggcctggatgttgtaatttacttgagaatgaagcaattt |
328 |
Q |
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| T |
6928650 |
ggacagacaaagcatagatagaataacaggatgttatttgaaccaatatgtcaatgagtaaggcatagatgttgtaatttacttaagaatgaagcatttt |
6928749 |
T |
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| Q |
329 |
tgtgaccaattatacatctcaataatttgatatgcaattttcaatttggcacatatgcagcaactttctgctatta |
404 |
Q |
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| T |
6928750 |
tgtgaccaattatacatctcaataatttgatatgcaattttcactttggcacatatgcagtaattttctgctatta |
6928825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 6928486 - 6928534
Alignment:
| Q |
12 |
caaaggaaaaacattggaagaaattcaggcttgcattagttcttagaga |
60 |
Q |
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| T |
6928486 |
caaaggcaaaacattggaagaaatccaggcttgcattagttcttagaga |
6928534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 49134719 - 49134748
Alignment:
| Q |
12 |
caaaggaaaaacattggaagaaattcaggc |
41 |
Q |
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| T |
49134719 |
caaaggaaaaacattggaagaaattcaggc |
49134748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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