View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17025_low_6 (Length: 539)

Name: NF17025_low_6
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17025_low_6
NF17025_low_6
[»] chr5 (3 HSPs)
chr5 (455-524)||(30652074-30652143)
chr5 (319-387)||(19611252-19611320)
chr5 (92-139)||(31778487-31778535)
[»] chr4 (3 HSPs)
chr4 (429-524)||(46632232-46632327)
chr4 (319-387)||(28462449-28462517)
chr4 (319-387)||(54188534-54188602)
[»] chr7 (5 HSPs)
chr7 (2-99)||(25630315-25630414)
chr7 (420-512)||(2046914-2047004)
chr7 (319-387)||(3367622-3367690)
chr7 (319-371)||(7710919-7710971)
chr7 (426-471)||(24510082-24510126)
[»] chr6 (1 HSPs)
chr6 (319-387)||(7600006-7600074)
[»] chr3 (1 HSPs)
chr3 (319-387)||(23361691-23361759)
[»] chr2 (1 HSPs)
chr2 (319-387)||(45402104-45402172)
[»] chr8 (1 HSPs)
chr8 (326-374)||(23241019-23241067)


Alignment Details
Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 455 - 524
Target Start/End: Original strand, 30652074 - 30652143
Alignment:
Q  455 tttggtagctaatggttttattatgaccttgttatgagttattatgagtttataagttattttgtcattg 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30652074 tttggtagctaatggttttattatgaccttgttatgagttattatgagtttataagttattttttcattg 30652143  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 19611252 - 19611320
Alignment:
Q  319 aggtattattgtgttgcatatgaggcgtttcattatttgtctcaatgaaatttgaccctgttttgcaat 387  Q
    |||||||||||||||||||| |||| |||| || | ||||||||||||||||||| |||||||||||||    
T  19611252 aggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaat 19611320  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 31778487 - 31778535
Alignment:
Q  92 ttatggcactagatttt-tctggatttaagcttttgcagtatttctgaa 139  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  31778487 ttatgtcactagattttttctggatttaagcttttgcagtatttctgaa 31778535  T

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Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 524
Target Start/End: Complemental strand, 46632327 - 46632232
Alignment:
Q  429 ttatatgtgatatagtgttttggacctttggtagctaatggttttattatgaccttgttatgagttattatgagtttataagttattttgtcattg 524  Q
    |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||| |||||||||||||| ||||||| ||| |||| |||||    
T  46632327 ttatatgtgatatagtgttttggacctttggtagctaagggttttgttttgaccttgtcatgagttattatgattttataacttactttggcattg 46632232  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 28462517 - 28462449
Alignment:
Q  319 aggtattattgtgttgcatatgaggcgtttcattatttgtctcaatgaaatttgaccctgttttgcaat 387  Q
    |||||||||||||||||||| |||| |||| || | ||||||||||||||||||| |||||||||||||    
T  28462517 aggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaat 28462449  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 54188602 - 54188534
Alignment:
Q  319 aggtattattgtgttgcatatgaggcgtttcattatttgtctcaatgaaatttgaccctgttttgcaat 387  Q
    ||||||||||||| ||| ||| ||| |||  || ||||| ||||||||||||||||  |||||||||||    
T  54188602 aggtattattgtgctgcctatcaggtgttcgataatttgactcaatgaaatttgactgtgttttgcaat 54188534  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 25630315 - 25630414
Alignment:
Q  2 tcagttagtgggaaggaaataaaaaccgaaacgttatgtttgtagtcggcgtctatttgccaaactgttattgcaagggattat--agtgagttatggca 99  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||| ||||||| |||||||||| ||||| | ||||||  ||||||||||||||    
T  25630315 tcagttagtgggaaggaaataaaagcctaaacgttatatttgtagtcggcttctattttccaaactgttgttgcatgagattatagagtgagttatggca 25630414  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 512
Target Start/End: Original strand, 2046914 - 2047004
Alignment:
Q  420 atcttcaatttatatgtgatatagtgttttggacctttggtagctaatggttttattatgaccttgttatgagttattatgagtttataagtt 512  Q
    ||||| |||||| ||||||||  ||||||||  |||||||||||| ||||| ||||| |||| ||||| ||||| |||||||| | |||||||    
T  2046914 atcttgaatttaaatgtgata--gtgttttgtgcctttggtagctgatggtcttattttgacattgttgtgagtgattatgaggtaataagtt 2047004  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 3367690 - 3367622
Alignment:
Q  319 aggtattattgtgttgcatatgaggcgtttcattatttgtctcaatgaaatttgaccctgttttgcaat 387  Q
    ||||||||||||| ||| ||| ||| |||| || ||||| ||||||||||||||||  |||||||||||    
T  3367690 aggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaat 3367622  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 7710919 - 7710971
Alignment:
Q  319 aggtattattgtgttgcatatgaggcgtttcattatttgtctcaatgaaattt 371  Q
    |||||| |||||||||||||||||| |||| || ||||| |||||||||||||    
T  7710919 aggtatgattgtgttgcatatgaggtgtttgataatttgactcaatgaaattt 7710971  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 24510082 - 24510126
Alignment:
Q  426 aatttatatgtgatatagtgttttggacctttggtagctaatggtt 471  Q
    |||||| |||||||||||||||| ||||||||| ||||||||||||    
T  24510082 aatttaaatgtgatatagtgttt-ggacctttgatagctaatggtt 24510126  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 7600006 - 7600074
Alignment:
Q  319 aggtattattgtgttgcatatgaggcgtttcattatttgtctcaatgaaatttgaccctgttttgcaat 387  Q
    |||||||||||||||||||| |||| |||| || | ||||||||||||||||||| |||||||||||||    
T  7600006 aggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaat 7600074  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 23361691 - 23361759
Alignment:
Q  319 aggtattattgtgttgcatatgaggcgtttcattatttgtctcaatgaaatttgaccctgttttgcaat 387  Q
    |||||||||||||||||||| |||| |||| || | ||||||||||||||||||| |||||||||||||    
T  23361691 aggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaat 23361759  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 45402104 - 45402172
Alignment:
Q  319 aggtattattgtgttgcatatgaggcgtttcattatttgtctcaatgaaatttgaccctgttttgcaat 387  Q
    |||||||||||||||||||| |||| |||| || | ||||||||||||||||||| |||||||||||||    
T  45402104 aggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaat 45402172  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 23241019 - 23241067
Alignment:
Q  326 attgtgttgcatatgaggcgtttcattatttgtctcaatgaaatttgac 374  Q
    |||||||||||||||| | |||| || ||||| ||||||||||||||||    
T  23241019 attgtgttgcatatgaagtgtttgataatttgactcaatgaaatttgac 23241067  T

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