View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17025_low_7 (Length: 507)
Name: NF17025_low_7
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17025_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 116 - 483
Target Start/End: Complemental strand, 36192167 - 36191798
Alignment:
| Q |
116 |
tttgtcaaggcatctgacgtatttcaggtaacttgtgtaataatgaggtttaaactattgcatgaaattattgtttccgtcccctacattcattcaatca |
215 |
Q |
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| T |
36192167 |
tttgtcaaggcacctgacgtatttcaggtaacttgtgtaataatgaggtttaaactattgcatgaaattattgtttccgtcccctacattca----atca |
36192072 |
T |
|
| Q |
216 |
tagttattagttgcagctggaaaacataatatcttctcaaaaggtgataacaccacttttatcttatgttgttatctgcaacttagtttagaatttctgt |
315 |
Q |
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| T |
36192071 |
tagttattagtcgcagctggaaaacataatatcttctcaaaaggtgataaggccacttttat-----gttgttatctgcaacttagtttagaatttttgt |
36191977 |
T |
|
| Q |
316 |
ttgccttttggaccgtctatcatcttgtagtatctatttttctcttataggcaagccagtcaaacttgtgttttatatactttgggattgccatttttat |
415 |
Q |
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| T |
36191976 |
ttgccttttggactgtgtatcatcttgtagtgtccatttttctcttataggcaaggcagttaaacttgtgttttatatactttggaattgccatttttat |
36191877 |
T |
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| Q |
416 |
gct-----------gagattccgaaccagtggaatcgctgtgaaaatttaaaatcagagaattctctctactttttgtg |
483 |
Q |
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| T |
36191876 |
gatttttttgctgagagattccgaaccagtggaatcgctgtgaaaatttaaaatcagagaattctctctattttttgtg |
36191798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 279 - 483
Target Start/End: Complemental strand, 32654455 - 32654242
Alignment:
| Q |
279 |
ttatgttgttatctgcaacttagtttagaatttctgtttgccttttggaccgtctatcatcttgtagtatctatttttctcttataggcaagccagtcaa |
378 |
Q |
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| T |
32654455 |
ttatgttgttatctgcaacttagtttagaatttctgtttgccttttggaccgtctatcatcttgtagtatctatttttctcttataggcaaggcagtcaa |
32654356 |
T |
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| Q |
379 |
acttgtgttttatatactttgggattgccattttta---------tgctgagattccgaaccagtggaatcgctgtgaaaatttaaaatcagagaattct |
469 |
Q |
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| T |
32654355 |
acttgtgttttatatactttgggattgccatttttatgatttttttgcttagattacgaaccagtggaatcgctgtgaaaatttaaaatcagagaattct |
32654256 |
T |
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| Q |
470 |
ctctactttttgtg |
483 |
Q |
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||||| |||||||| |
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| T |
32654255 |
ctctattttttgtg |
32654242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 36192286 - 36192232
Alignment:
| Q |
64 |
atctcagcatgtcaaaggatactttcaagttcctcaccaattatcttgctacttt |
118 |
Q |
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| T |
36192286 |
atctcagcatgtcaaaggattcttttaagttcctcaccaattatcttgctacttt |
36192232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 5055325 - 5055467
Alignment:
| Q |
116 |
tttgtcaaggcatctgacgtatttcaggtaacttgtgtaataatgaggtttaaactattgcatgaaattattgtttccgtcccctacattcattcaatca |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5055325 |
tttgtcaaggcacctgacgtatttcaggtaacttgtgtaatattgaggtttaaactattgcatgaaattattgtttccgtccccta----cattcaatca |
5055420 |
T |
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| Q |
216 |
tagttattagttgcagctggaaaacataatatcttctcaaaaggtga |
262 |
Q |
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| T |
5055421 |
tagttattagtcgcagctggaaaacataatatcttctcaaaaggtga |
5055467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 359 - 470
Target Start/End: Original strand, 5055509 - 5055631
Alignment:
| Q |
359 |
cttataggcaagccagtcaaacttgtgttttatatactttgggattgccatttttatgct-----------gagattccgaaccagtggaatcgctgtga |
447 |
Q |
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| T |
5055509 |
cttataggcatggcagtcaaacttgtgttttatatactttggaattgccatttttatgattgttttgctgagagattccaaacctgtggaatcgctgtga |
5055608 |
T |
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| Q |
448 |
aaatttaaaatcagagaattctc |
470 |
Q |
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| T |
5055609 |
aaatttaaaatcctagaattctc |
5055631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 5055206 - 5055260
Alignment:
| Q |
64 |
atctcagcatgtcaaaggatactttcaagttcctcaccaattatcttgctacttt |
118 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5055206 |
atctcagcttgtcaaaggattctttcaagttcctcaccaattatcttgctacttt |
5055260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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