View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17025_low_9 (Length: 457)

Name: NF17025_low_9
Description: NF17025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17025_low_9
NF17025_low_9
[»] chr8 (3 HSPs)
chr8 (1-436)||(33048721-33049156)
chr8 (3-39)||(1586619-1586655)
chr8 (2-38)||(4298899-4298935)
[»] chr1 (6 HSPs)
chr1 (3-34)||(24701117-24701148)
chr1 (232-301)||(17420875-17420944)
chr1 (2-34)||(29230075-29230107)
chr1 (2-34)||(30847737-30847769)
chr1 (2-38)||(32461476-32461512)
chr1 (2-38)||(38078674-38078710)
[»] chr5 (6 HSPs)
chr5 (2-36)||(38749578-38749612)
chr5 (2-38)||(8420037-8420073)
chr5 (2-34)||(16881146-16881178)
chr5 (2-38)||(24906314-24906350)
chr5 (3-39)||(27253296-27253332)
chr5 (2-38)||(31084333-31084369)
[»] chr4 (8 HSPs)
chr4 (2-39)||(8457935-8457972)
chr4 (2-39)||(14465087-14465124)
chr4 (2-39)||(43093537-43093574)
chr4 (2-34)||(2976704-2976736)
chr4 (2-38)||(21945513-21945549)
chr4 (2-34)||(27096018-27096050)
chr4 (2-38)||(37203274-37203310)
chr4 (2-38)||(51701268-51701304)
[»] chr3 (6 HSPs)
chr3 (2-39)||(28576726-28576763)
chr3 (2-35)||(41319326-41319359)
chr3 (2-34)||(12704674-12704706)
chr3 (2-38)||(20503475-20503511)
chr3 (2-34)||(21110480-21110512)
chr3 (2-34)||(32166200-32166232)
[»] chr7 (1 HSPs)
chr7 (2-38)||(7438716-7438752)
[»] chr6 (6 HSPs)
chr6 (2-38)||(426527-426563)
chr6 (2-34)||(2493431-2493463)
chr6 (2-38)||(4118346-4118382)
chr6 (2-34)||(8148130-8148162)
chr6 (2-38)||(28715305-28715341)
chr6 (2-34)||(33076418-33076450)
[»] chr2 (2 HSPs)
chr2 (231-267)||(13632989-13633025)
chr2 (2-38)||(30335427-30335463)


Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 33049156 - 33048721
Alignment:
1 gataatttgaaaaaatgacataattgaatgtaattacataatacatatgttgatatcacatgtgttggacactgaacaccagttcgattagaacttagaa 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||    
33049156 gataacttgaaaaaatgacataattgaatgtaattacataatacatatgttgatgtcacatgtgttggacactgaacacgagttctattagaacttagaa 33049057  T
101 ttagaagtgtcagtgctacgtatgttttgatagataaagatggtagtattaatattatataaaaacttgaaaagtttaatgaagattcattcatcatata 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
33049056 ttagaagtgtcagtgctaagtatgttttgatagataaagatggtagtattaatattatataaaaacttgaaaagtttaatgaagattcactcatcatata 33048957  T
201 gcaacatgaccgctttgtaactgtgtttatatttaaaataactgcaaaatattgaattcttgttggacgtaagtgtaaaactagtttataccaattgtgc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
33048956 gcaacatgaccgctttgtaactgtgtttatatttaaaataactgcaaaatattgaattcttgttggacataagtgtaaaactagtttataccaattgtgc 33048857  T
301 aagatcatcatcatcattactgattgtgatggcaccaatggcatggggatgccagcgtaggccaacctagaggattactgcataggtctaaacgccaatc 400  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
33048856 aagatcatcatcatcattactgattgtgatggcgccaatggcatggggatgccagcgtaggccaacctagaggattactgcataggtctaaatgccaatc 33048757  T
401 aattttaaccaaacaaaaataatcaactaaaccacg 436  Q
    ||||||||||||||||||||||||||||||||||||    
33048756 aattttaaccaaacaaaaataatcaactaaaccacg 33048721  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 1586619 - 1586655
Alignment:
3 taatttgaaaaaatgacataattgaatgtaattacat 39  Q
    |||||||||||||||||||||||||| ||||| ||||    
1586619 taatttgaaaaaatgacataattgaacgtaatcacat 1586655  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 4298935 - 4298899
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    ||||||||||||||| |||||||| ||||||||||||    
4298935 ataatttgaaaaaatcacataatttaatgtaattaca 4298899  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 24701148 - 24701117
Alignment:
3 taatttgaaaaaatgacataattgaatgtaat 34  Q
    ||||||||||||||||||||||||||||||||    
24701148 taatttgaaaaaatgacataattgaatgtaat 24701117  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 17420944 - 17420875
Alignment:
232 tttaaaataactgcaaaatattgaattcttgttggacgtaagtgtaaaactagtttataccaattgtgca 301  Q
    |||||||||||| |||||||||  |||||  |||  ||||||||||||||||||||| || || ||||||    
17420944 tttaaaataactacaaaatattttattctcattgaccgtaagtgtaaaactagtttacactaactgtgca 17420875  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 29230075 - 29230107
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaat 34  Q
    ||||||||| |||||||||||||||||||||||    
29230075 ataatttgagaaaatgacataattgaatgtaat 29230107  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 30847769 - 30847737
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaat 34  Q
    |||||||||||||||||||||||| ||||||||    
30847769 ataatttgaaaaaatgacataattcaatgtaat 30847737  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 32461512 - 32461476
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    ||||||||||||||| |||||||| ||||||||||||    
32461512 ataatttgaaaaaatcacataatttaatgtaattaca 32461476  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 38078710 - 38078674
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    ||||||||||||||| |||||||| ||||||||||||    
38078710 ataatttgaaaaaatcacataattcaatgtaattaca 38078674  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 38749612 - 38749578
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaatta 36  Q
    |||||||||||||||||||||||| ||||||||||    
38749612 ataatttgaaaaaatgacataattcaatgtaatta 38749578  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 8420037 - 8420073
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    ||||||||||||||| |||||||| ||||||||||||    
8420037 ataatttgaaaaaataacataattcaatgtaattaca 8420073  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 16881146 - 16881178
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaat 34  Q
    |||||||||||||||||||||||| ||||||||    
16881146 ataatttgaaaaaatgacataatttaatgtaat 16881178  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 24906350 - 24906314
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    |||||||||||||||||||||||| | ||||||||||    
24906350 ataatttgaaaaaatgacataattcagtgtaattaca 24906314  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 27253296 - 27253332
Alignment:
3 taatttgaaaaaatgacataattgaatgtaattacat 39  Q
    ||||||||||||||| |||||||||||||||| ||||    
27253296 taatttgaaaaaatgtcataattgaatgtaatcacat 27253332  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 31084333 - 31084369
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    ||||||||||||||| |||||||| ||||||||||||    
31084333 ataatttgaaaaaatcacataattcaatgtaattaca 31084369  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 8457935 - 8457972
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattacat 39  Q
    ||||||||| ||||||||||||||||||||||| ||||    
8457935 ataatttgagaaaatgacataattgaatgtaatcacat 8457972  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 14465124 - 14465087
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattacat 39  Q
    ||||||||||||||| |||||||| |||||||||||||    
14465124 ataatttgaaaaaatcacataattcaatgtaattacat 14465087  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 43093574 - 43093537
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattacat 39  Q
    |||||||||||||||| |||||||||||||||| ||||    
43093574 ataatttgaaaaaatggcataattgaatgtaatcacat 43093537  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 2976704 - 2976736
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaat 34  Q
    ||||||||| |||||||||||||||||||||||    
2976704 ataatttgagaaaatgacataattgaatgtaat 2976736  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 21945513 - 21945549
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    |||||||||||||||||||||||| | ||||||||||    
21945513 ataatttgaaaaaatgacataattcagtgtaattaca 21945549  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 27096050 - 27096018
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaat 34  Q
    ||||||||| |||||||||||||||||||||||    
27096050 ataatttgacaaaatgacataattgaatgtaat 27096018  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 37203274 - 37203310
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    |||||||||||||||||||||||| | ||||||||||    
37203274 ataatttgaaaaaatgacataatttagtgtaattaca 37203310  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 51701268 - 51701304
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    ||||||||||||||| |||||||||| ||||||||||    
51701268 ataatttgaaaaaattacataattgagtgtaattaca 51701304  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 28576726 - 28576763
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattacat 39  Q
    ||||||||| ||||||||| ||||||||||||||||||    
28576726 ataatttgagaaaatgacaaaattgaatgtaattacat 28576763  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 41319359 - 41319326
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaatt 35  Q
    |||||||||||||||||||||||| |||||||||    
41319359 ataatttgaaaaaatgacataattcaatgtaatt 41319326  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 12704706 - 12704674
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaat 34  Q
    |||||||||||||||||||||||| ||||||||    
12704706 ataatttgaaaaaatgacataattcaatgtaat 12704674  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 20503475 - 20503511
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    |||||||||||||||||||||||| | ||||||||||    
20503475 ataatttgaaaaaatgacataattcagtgtaattaca 20503511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 21110512 - 21110480
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaat 34  Q
    ||||||||| |||||||||||||||||||||||    
21110512 ataatttgagaaaatgacataattgaatgtaat 21110480  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 32166232 - 32166200
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaat 34  Q
    ||||||||| |||||||||||||||||||||||    
32166232 ataatttgagaaaatgacataattgaatgtaat 32166200  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 7438716 - 7438752
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    ||||||||||||||| |||||||| ||||||||||||    
7438716 ataatttgaaaaaatcacataattcaatgtaattaca 7438752  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 426563 - 426527
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    ||||||||||||||| |||||||| ||||||||||||    
426563 ataatttgaaaaaatcacataattaaatgtaattaca 426527  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 2493463 - 2493431
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaat 34  Q
    ||||||||| |||||||||||||||||||||||    
2493463 ataatttgacaaaatgacataattgaatgtaat 2493431  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 4118382 - 4118346
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    ||||||||||||||| |||||||| ||||||||||||    
4118382 ataatttgaaaaaatcacataattaaatgtaattaca 4118346  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 8148130 - 8148162
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaat 34  Q
    ||||||||| |||||||||||||||||||||||    
8148130 ataatttgagaaaatgacataattgaatgtaat 8148162  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 28715305 - 28715341
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    |||||||||||||||||||||||| | ||||||||||    
28715305 ataatttgaaaaaatgacataattcagtgtaattaca 28715341  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 33076418 - 33076450
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaat 34  Q
    ||||||||| |||||||||||||||||||||||    
33076418 ataatttgagaaaatgacataattgaatgtaat 33076450  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 13633025 - 13632989
Alignment:
231 atttaaaataactgcaaaatattgaattcttgttgga 267  Q
    |||||||||||||| |||||||||||||||| |||||    
13633025 atttaaaataactgtaaaatattgaattcttattgga 13632989  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 30335427 - 30335463
Alignment:
2 ataatttgaaaaaatgacataattgaatgtaattaca 38  Q
    |||||||||||||||||||||||| | ||||||||||    
30335427 ataatttgaaaaaatgacataatttagtgtaattaca 30335463  T

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