View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17026_low_2 (Length: 375)
Name: NF17026_low_2
Description: NF17026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17026_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 62 - 357
Target Start/End: Original strand, 44915543 - 44915838
Alignment:
| Q |
62 |
ctgcaatggcttcacatacagctgctgttggaactccatctacaaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttcccaag |
161 |
Q |
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| T |
44915543 |
ctgcaatggcttcacatacagctgctgttggaactccatctacaaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttcccaag |
44915642 |
T |
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| Q |
162 |
accccaacaatgagtggagttgcttctcctgatagtgttattactggtgtcgcatttctccaagtaattggatcccaacaatttagtgctagctttttct |
261 |
Q |
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| T |
44915643 |
accccaacaatgagtggagttgcttctcctgatagtgttattactagtgtcgcatttctccaagtaattggatcccaacaatttagtgctagcattttct |
44915742 |
T |
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| Q |
262 |
ttcagtatcaattattaaatagtgcatggatattgagaagctgagaatgctttttacatttctatcatctgctcagacattctgcattgtatcagg |
357 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44915743 |
ttcagtatcaattattaaatagtgcatgaatattgagaagctgagaatgctttttacatttctatcatctgctcagacattctgcattgtatcagg |
44915838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 7749368 - 7749481
Alignment:
| Q |
103 |
acaaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttcccaagaccccaacaatgagtggagttgcttctcctgatagtgttat |
202 |
Q |
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|||||||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||| || |||||||||||||||||||||||| |||||||| |
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| T |
7749368 |
acaaaggcaacaacaggcacacctagctgcaaaacggaga-tctaattcccttcccaagacacctgcaatgagtggagttgcttctcctgctagtgttag |
7749466 |
T |
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| Q |
203 |
tactggtgtcgcatt |
217 |
Q |
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| T |
7749467 |
tactggtgtcccatt |
7749481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 7749318 - 7749355
Alignment:
| Q |
64 |
gcaatggcttcacatacagctgctgttggaactccatc |
101 |
Q |
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| T |
7749318 |
gcaatggcttcacttactgctgctgttggaactccatc |
7749355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 2339254 - 2339356
Alignment:
| Q |
104 |
caaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttcccaagaccccaacaatgagtggagttgcttctcctgatagtgttatt |
203 |
Q |
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||||||||||||||| ||||||||||||||||| || | ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
2339254 |
caaaggcaacaacaggcacacctagctgcaaaacgggga-tctaattcctttcccaagaccccatcaatgagtggagttgcttctcctgatagtgttttt |
2339352 |
T |
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| Q |
204 |
actg |
207 |
Q |
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|||| |
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| T |
2339353 |
actg |
2339356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 2339188 - 2339226
Alignment:
| Q |
64 |
gcaatggcttcacatacagctgctgttggaactccatct |
102 |
Q |
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||||||||||||| ||| ||||||||||||||||||||| |
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| T |
2339188 |
gcaatggcttcacgtactgctgctgttggaactccatct |
2339226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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