View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17026_low_3 (Length: 286)

Name: NF17026_low_3
Description: NF17026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17026_low_3
NF17026_low_3
[»] chr6 (10 HSPs)
chr6 (13-270)||(24417427-24417684)
chr6 (72-119)||(1459541-1459588)
chr6 (72-173)||(4743845-4743946)
chr6 (72-168)||(4183001-4183097)
chr6 (72-119)||(1470923-1470970)
chr6 (74-119)||(9819831-9819876)
chr6 (72-121)||(19119065-19119114)
chr6 (72-121)||(19126359-19126408)
chr6 (72-112)||(176345-176385)
chr6 (72-120)||(370785-370833)
[»] chr2 (8 HSPs)
chr2 (13-257)||(33020179-33020423)
chr2 (13-178)||(33038105-33038270)
chr2 (70-257)||(33026520-33026710)
chr2 (71-114)||(34560916-34560959)
chr2 (72-122)||(36577367-36577417)
chr2 (72-120)||(7168690-7168738)
chr2 (67-113)||(6538844-6538890)
chr2 (72-122)||(7160754-7160804)
[»] chr5 (10 HSPs)
chr5 (72-122)||(23766862-23766912)
chr5 (72-122)||(23816710-23816760)
chr5 (68-122)||(20292996-20293050)
chr5 (72-122)||(11081814-11081864)
chr5 (68-122)||(20301444-20301498)
chr5 (68-122)||(20305857-20305911)
chr5 (68-122)||(20310261-20310315)
chr5 (72-122)||(23769646-23769696)
chr5 (72-122)||(23819494-23819544)
chr5 (73-122)||(3181718-3181767)
[»] chr3 (50 HSPs)
chr3 (67-131)||(2631349-2631413)
chr3 (69-122)||(2476635-2476688)
chr3 (69-122)||(13498225-13498278)
chr3 (70-122)||(2456250-2456302)
chr3 (71-122)||(1891063-1891114)
chr3 (63-122)||(2644353-2644412)
chr3 (63-122)||(2659143-2659202)
chr3 (63-122)||(4142125-4142184)
chr3 (72-122)||(803218-803268)
chr3 (72-122)||(2442040-2442090)
chr3 (72-122)||(2696732-2696782)
chr3 (72-122)||(3754601-3754651)
chr3 (72-122)||(4157944-4157994)
chr3 (72-122)||(7432054-7432104)
chr3 (72-121)||(2459277-2459326)
chr3 (50-131)||(9561963-9562044)
chr3 (63-120)||(9587176-9587233)
chr3 (70-122)||(771497-771549)
chr3 (50-122)||(7324409-7324481)
chr3 (67-131)||(9608339-9608403)
chr3 (71-131)||(43991952-43992012)
chr3 (72-131)||(768329-768388)
chr3 (45-128)||(2492077-2492160)
chr3 (63-122)||(7334230-7334289)
chr3 (72-122)||(37753345-37753395)
chr3 (69-122)||(754606-754659)
chr3 (65-122)||(7430529-7430586)
chr3 (69-122)||(7942486-7942539)
chr3 (72-121)||(23197014-23197063)
chr3 (220-260)||(771656-771696)
chr3 (50-122)||(956382-956454)
chr3 (70-122)||(1437997-1438048)
chr3 (71-131)||(7442976-7443036)
chr3 (64-120)||(14888604-14888660)
chr3 (63-122)||(2502149-2502208)
chr3 (63-122)||(2678390-2678449)
chr3 (72-131)||(9594624-9594683)
chr3 (205-256)||(44001479-44001530)
chr3 (72-122)||(989397-989447)
chr3 (220-258)||(2631219-2631257)
chr3 (67-117)||(37757731-37757781)
chr3 (63-113)||(44001605-44001655)
chr3 (220-257)||(783950-783987)
chr3 (76-121)||(997578-997623)
chr3 (76-121)||(1013968-1014013)
chr3 (69-122)||(9565826-9565879)
chr3 (72-121)||(23230982-23231031)
chr3 (74-122)||(968672-968720)
chr3 (220-260)||(2456101-2456141)
chr3 (67-137)||(2635710-2635777)
[»] chr1 (12 HSPs)
chr1 (63-119)||(51381446-51381502)
chr1 (72-122)||(51854948-51854998)
chr1 (72-119)||(51832377-51832424)
chr1 (72-122)||(51858607-51858657)
chr1 (74-122)||(51782800-51782848)
chr1 (72-122)||(51756750-51756800)
chr1 (81-122)||(24246506-24246547)
chr1 (73-122)||(24513057-24513106)
chr1 (73-122)||(25478866-25478915)
chr1 (73-122)||(51829778-51829827)
chr1 (82-122)||(23896147-23896187)
chr1 (74-122)||(24629213-24629261)
[»] scaffold0044 (1 HSPs)
scaffold0044 (69-119)||(89147-89197)
[»] scaffold1004 (1 HSPs)
scaffold1004 (75-268)||(1998-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (75-268)||(4493-4686)
[»] scaffold0015 (1 HSPs)
scaffold0015 (73-122)||(32330-32379)
[»] chr4 (1 HSPs)
chr4 (72-120)||(22672127-22672175)
[»] chr7 (2 HSPs)
chr7 (73-122)||(1421170-1421219)
chr7 (67-131)||(39298969-39299033)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 24417427 - 24417684
Alignment:
Q  13 aatatataaagcctttgtataaagacgtattacccggtcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24417427 aatatataaagcctttgtataaagacgtattacccggtcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcata 24417526  T
Q  113 atccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaacccacaaacttgtgaaacaatcatcctccatattaggcagcg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  24417527 atccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaacccccaaacttgtgaaacaatcatcctccaaattaggcagcg 24417626  T
Q  213 gaagccgttgatatgactcattttccaaatcaagagaaacaatgaaaaacgaagaacc 270  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24417627 caagccgtttatatgactcattttccaaatcaagagaaacaatgaaaaacgaagaacc 24417684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 1459541 - 1459588
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaa 119  Q
    ||||||||||||||||||||||||||||| | |||||||||| |||||    
T  1459541 acaatttagtccaagattctttatttccaaaatctttcataacccaaa 1459588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 4743845 - 4743946
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaac 171  Q
    |||||||||||||||||| |  |||||||||||| ||||| ||||||||||  ||||||  |||||   | | ||  |||||||||||||||||||| ||    
T  4743845 acaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattagaaaaaatgcacaaacaatccctcaacac 4743944  T
Q  172 cc 173  Q
    ||    
T  4743945 cc 4743946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 4183001 - 4183097
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaa 168  Q
    |||||||||||||||||| |  |||||||||||| ||||| ||||||||||  ||||||  |||||   | | ||  ||||||||||||||||||||    
T  4183001 acaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattagaaaaaatgcacaaacaatccctcaa 4183097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 1470923 - 1470970
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaa 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||| |||||    
T  1470923 acaatttagaccaagaatctttatttccataatctttcataacccaaa 1470970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 9819831 - 9819876
Alignment:
Q  74 aatttagtccaagattctttatttccatattctttcataatccaaa 119  Q
    |||||||||||||| ||| ||||||||||||| ||||||| |||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 19119114 - 19119065
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaaca 121  Q
    |||||||||||||||| |||| |||||||||||| ||||| | |||||||    
T  19119114 acaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 19126408 - 19126359
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaaca 121  Q
    |||||||||||||||| |||| |||||||||||| ||||| | |||||||    
T  19126408 acaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 176385 - 176345
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcata 112  Q
    |||||||||||||||| |||||||||||||| || ||||||    
T  176385 acaatttagtccaagaatctttatttccataatcattcata 176345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 370785 - 370833
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaac 120  Q
    |||||||||||||||| |||||||||||||| |  ||||||| ||||||    
T  370785 acaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 33020423 - 33020179
Alignment:
Q  13 aatatataaagcctttgtataaagacgtattacccggtcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcata 112  Q
    |||||||||||||||||||||  |||  |   |||| |||| |||||   ||| || ||||||| |||||||||| | ||||||||||||||| ||||||    
T  33020423 aatatataaagcctttgtatagtgacacaaaccccgatcttccatgtaaggaacacggtacaatctagtccaagactttttatttccatattccttcata 33020324  T
Q  113 atccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaacccacaaacttgtgaaacaatcatcctccatattaggcagcg 212  Q
    ||||| ||||| |||||||  ||||   ||| || || |||||| |||||||||||||||| |||| |||| |||  ||| | ||| | || |||||||     
T  33020323 atccacacattaaaaaacatatcactatttgcaaagaagcacaagcaatccctcaaaacccccaaatttgtcaaaggatccttctcgaaatcaggcagca 33020224  T
Q  213 gaagccgttgatatgactcattttccaaatcaagagaaacaatga 257  Q
     || |  |||||| ||||| || ||||||||||||||||||||||    
T  33020223 aaaacgtttgatacgactccttctccaaatcaagagaaacaatga 33020179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 33038270 - 33038105
Alignment:
Q  13 aatatataaagcctttgtataaagacgtattacccggtcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcata 112  Q
    |||||||||||||||||||||  |||  |   |||| |||| |||||   ||| || ||||||| |||||||||| | ||| ||||||||||| ||||||    
T  33038270 aatatataaagcctttgtatagcgacacaaaccccgatcttccatgtaaggaacacggtacaatctagtccaagactttttgtttccatattccttcata 33038171  T
Q  113 atccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaacccacaaa 178  Q
    ||||||||||  |||||||  ||||   ||| || ||||||||| |||||||||||||||| ||||    
T  33038170 atccaaacatcaaaaaacatatcactacttgcaaagatgcacaagcaatccctcaaaacccccaaa 33038105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 257
Target Start/End: Complemental strand, 33026710 - 33026520
Alignment:
Q  70 gtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaa 169  Q
    ||||||| |||||||||| | ||||||||||||||  ||||||| ||||||||  |||||||  |||    ||  || ||||||||| ||||||||||||    
T  33026710 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaaa 33026611  T
Q  170 acccacaaa---cttgtgaaacaatcatcctccatattaggcagcggaagccgttgatatgactcattttccaaatcaagagaaacaatga 257  Q
    |||||||||   ||| | |||| ||| | ||| | ||  ||||||| ||||  ||||||  |||| || ||||||||||||||||||||||    
T  33026610 acccacaaagttcttatcaaacgatccttctcaaaatctggcagcgaaagcgtttgatacaactccttctccaaatcaagagaaacaatga 33026520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 34560916 - 34560959
Alignment:
Q  71 tacaatttagtccaagattctttatttccatattctttcataat 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  34560916 tacaatttagtccaagattttttatttccatattctttcataat 34560959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 36577417 - 36577367
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  36577417 acaatttaatccaagactctttatttccatattccttcataatccaaacat 36577367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 7168690 - 7168738
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaac 120  Q
    |||||||||||||||| || |||||||||||||| ||||||| ||||||    
T  7168690 acaatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 6538890 - 6538844
Alignment:
Q  67 actgtacaatttagtccaagattctttatttccatattctttcataa 113  Q
    |||| |||||||||||||||| |||||||||||||| || |||||||    
T  6538890 actgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 7160754 - 7160804
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||| || ||||||||||| || ||||||| ||||||||    
T  7160754 acaatttagtccaagaatcattatttccatactccttcataagccaaacat 7160804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 23766862 - 23766912
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23766862 acaatttagtccaagactctttatttccatattctttcataatccaaacat 23766912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 23816710 - 23816760
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23816710 acaatttagtccaagactctttatttccatattctttcataatccaaacat 23816760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 20293050 - 20292996
Alignment:
Q  68 ctgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  20293050 ctgtataatttagtccaagactctttaattccatattccttcataatccaaacat 20292996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 11081864 - 11081814
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||| |||||||||||||| || ||||||| ||||||||    
T  11081864 acaatttagtccaagactctttatttccatactccttcataacccaaacat 11081814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 20301498 - 20301444
Alignment:
Q  68 ctgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||| |||||||||||||| |||||| || ||||||| ||||||||||||||||    
T  20301498 ctgtataatttagtccaagactctttaattgcatattccttcataatccaaacat 20301444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 20305911 - 20305857
Alignment:
Q  68 ctgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||||||| ||||    
T  20305911 ctgtataatttagtccaagactctttaattccatattccttcataatccagacat 20305857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 20310315 - 20310261
Alignment:
Q  68 ctgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||||||| ||||    
T  20310315 ctgtataatttagtccaagactctttaattccatattccttcataatccagacat 20310261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 23769646 - 23769696
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||||||||  ||||||| |||||||| ||||||||||||||||    
T  23769646 acaatttagtccaagacgctttattcccatattccttcataatccaaacat 23769696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 23819494 - 23819544
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||||||||  ||||||| |||||||| ||||||||||||||||    
T  23819494 acaatttagtccaagacgctttattcccatattccttcataatccaaacat 23819544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 3181767 - 3181718
Alignment:
Q  73 caatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||| ||||||| |||| |||||||||||| ||||||| ||||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacat 3181718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 2631413 - 2631349
Alignment:
Q  67 actgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 131  Q
    |||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||    
T  2631413 actgcacaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaaca 2631349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 2476688 - 2476635
Alignment:
Q  69 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||||||||||| |||||||||||||| | |||||||||||||||||    
T  2476688 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacat 2476635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 13498278 - 13498225
Alignment:
Q  69 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  13498278 tgtataatttagtccaagactctttatttccatattccttcataatccaaacat 13498225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 2456302 - 2456250
Alignment:
Q  70 gtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  2456302 gtacaatttagtccaagagtctttatttccatattccttcataacccaaacat 2456250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 1891063 - 1891114
Alignment:
Q  71 tacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  1891063 tacaatttagtccaagagtctttatttccatgttccttcataatccaaacat 1891114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 2644353 - 2644412
Alignment:
Q  63 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||| ||||||||||||||||||| |||| ||||||||| || ||||||||||||||||    
T  2644353 gaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacat 2644412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 2659143 - 2659202
Alignment:
Q  63 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||| ||||||||||||||||||| |||| ||||||||| || ||||||||||||||||    
T  2659143 gaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacat 2659202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 4142125 - 4142184
Alignment:
Q  63 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||| || |||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  4142125 gaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacat 4142184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 803218 - 803268
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  803218 acaacttagtccaagactctttatttccatattctttcataacccaaacat 803268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 2442090 - 2442040
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  2442090 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 2442040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 2696732 - 2696782
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  2696732 acaatttaatccaagactctttatttccatattccttcataatccaaacat 2696782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 3754651 - 3754601
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  3754651 acaatttagtccaagactctttatttccatattccttcataacccaaacat 3754601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 4157944 - 4157994
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  4157944 acaatttagtccaagactctttatttccatattccttcataagccaaacat 4157994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 7432054 - 7432104
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  7432054 acaatttagtccacgattctttatttccatattccttcatactccaaacat 7432104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 2459326 - 2459277
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaaca 121  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||||||    
T  2459326 acaattttgtccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 9561963 - 9562044
Alignment:
Q  50 tcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 131  Q
    ||||||||||   ||| |||||| |||||||||||||| |||| ||||||||| || ||||||||||||||||  |||||||    
T  9561963 tcttgcatgttaggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatccaaaaaca 9562044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 9587176 - 9587233
Alignment:
Q  63 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaac 120  Q
    ||||| |||||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  9587176 gaatattgtacaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 771497 - 771549
Alignment:
Q  70 gtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||    
T  771497 gtacaatttagtccaagagtctgtatttccatattccttcataacccaaacat 771549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 7324409 - 7324481
Alignment:
Q  50 tcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||   ||| ||| ||||||||||||||||| ||||||||||| || || ||||||||||||||||    
T  7324409 tcttgcatgttaggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacat 7324481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 9608339 - 9608403
Alignment:
Q  67 actgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 131  Q
    |||||| |||||||||||||| ||| ||||||||||||| ||||||| ||||||||  |||||||    
T  9608339 actgtataatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaaca 9608403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 43992012 - 43991952
Alignment:
Q  71 tacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 131  Q
    |||||||| |||||||| ||| ||||||||||||| ||||||||||||||||  |||||||    
T  43992012 tacaatttggtccaagactctatatttccatattccttcataatccaaacatccaaaaaca 43991952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 768329 - 768388
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 131  Q
    |||||||||||||||| |||| |||||| || || ||||||||||||||||| |||||||    
T  768329 acaatttagtccaagactcttcatttccgtactcattcataatccaaacattaaaaaaca 768388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 2492160 - 2492077
Alignment:
Q  45 cccggtcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaa 128  Q
    |||| ||||||||||   ||| ||| ||||||||||||||||| |||  ||||||||| || ||||||||||||||||| ||||    
T  2492160 cccgatcttgcatgttaggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacattcaaaa 2492077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 7334230 - 7334289
Alignment:
Q  63 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||| ||||||||||||||||||| ||||||||||| || || ||||| ||||||||||    
T  7334230 gaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacat 7334289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 37753345 - 37753395
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||| ||||| ||||||||||| | ||||||||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacat 37753395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 754606 - 754659
Alignment:
Q  69 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||||||||||| |||| || |||||| || ||||||||||||||||    
T  754606 tgtacaatttagtccaagactcttgatctccatactccttcataatccaaacat 754659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 7430529 - 7430586
Alignment:
Q  65 atactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||||| |||| | |||||||||||| |  ||||||||||||||||    
T  7430529 atactgtacaatttagtctaagactttttatttccatacttcttcataatccaaacat 7430586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 7942539 - 7942486
Alignment:
Q  69 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||| ||||||| |||||||| ||||| || ||||||||||||||||    
T  7942539 tgtacaatttaatccaagactctttattaccatactccttcataatccaaacat 7942486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 23197063 - 23197014
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaaca 121  Q
    ||||||||||||||||||||| |||||||||||| ||||| | |||||||    
T  23197063 acaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 771656 - 771696
Alignment:
Q  220 ttgatatgactcattttccaaatcaagagaaacaatgaaaa 260  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  771656 ttgatatgactcattctccaaatcaagagaaacaatcaaaa 771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 956454 - 956382
Alignment:
Q  50 tcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||   |||| || ||||||||  |||||| ||||| ||||||||||| ||||||||||||||||    
T  956454 tcttgcatgtgagaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacat 956382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 1438048 - 1437997
Alignment:
Q  70 gtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||    
T  1438048 gtacaatttaatccaagagtctttatttccatattccttcataa-ccaaacat 1437997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 7442976 - 7443036
Alignment:
Q  71 tacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 131  Q
    ||||| ||||||||||| |||| ||||||||| || ||||| ||||||||||| |||||||    
T  7442976 tacaacttagtccaagactcttgatttccatactccttcatgatccaaacattaaaaaaca 7443036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 14888604 - 14888660
Alignment:
Q  64 aatactgtacaatttagtccaagattctttatttccatattctttcataatccaaac 120  Q
    |||| |||||||||||||| |||  ||||||||| ||||||| ||||||||||||||    
T  14888604 aatattgtacaatttagtctaaggctctttattttcatattcattcataatccaaac 14888660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 2502208 - 2502149
Alignment:
Q  63 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||| |||||| |||||||||| | || ||||||||||| || ||||||||||||||||    
T  2502208 gaatagtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacat 2502149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 2678390 - 2678449
Alignment:
Q  63 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||| || ||||||||||||| || ||||| |||||||||| |||||||| ||||||||    
T  2678390 gaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacat 2678449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 9594624 - 9594683
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 131  Q
    |||||||||||||||| |||| |||||| || |  ||||||||||||||||| |||||||    
T  9594624 acaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaaca 9594683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 44001530 - 44001479
Alignment:
Q  205 aggcagcggaagccgttgatatgactcattttccaaatcaagagaaacaatg 256  Q
    |||||||| |||| ||||||||||||| ||||| | ||||||||||||||||    
T  44001530 aggcagcgaaagctgttgatatgactccttttcaagatcaagagaaacaatg 44001479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 989447 - 989397
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||| ||||||||||| || |||||||| | ||||||||    
T  989447 acaatttagtccaagactctttatttccgtactctttcattacccaaacat 989397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 2631257 - 2631219
Alignment:
Q  220 ttgatatgactcattttccaaatcaagagaaacaatgaa 258  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  2631257 ttgatatgactcattttctaaatcaagagaaagaatgaa 2631219  T

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Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 37757731 - 37757781
Alignment:
Q  67 actgtacaatttagtccaagattctttatttccatattctttcataatcca 117  Q
    ||||||||| || |||||||| ||||| ||||||||||| |||||||||||    
T  37757731 actgtacaacttcgtccaagactctttgtttccatattccttcataatcca 37757781  T

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Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 44001655 - 44001605
Alignment:
Q  63 gaatactgtacaatttagtccaagattctttatttccatattctttcataa 113  Q
    ||||| |||||| |||||||||||| |||||| |||||||||| |||||||    
T  44001655 gaatagtgtacagtttagtccaagactctttaattccatattccttcataa 44001605  T

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Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 783950 - 783987
Alignment:
Q  220 ttgatatgactcattttccaaatcaagagaaacaatga 257  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  783950 ttgatacgactcattctccaaatcaagagaaacaatga 783987  T

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Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 997623 - 997578
Alignment:
Q  76 tttagtccaagattctttatttccatattctttcataatccaaaca 121  Q
    |||||||||||| ||||||||||||||||| ||||| | |||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaaca 997578  T

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Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 1014013 - 1013968
Alignment:
Q  76 tttagtccaagattctttatttccatattctttcataatccaaaca 121  Q
    |||||||||||| ||||||||||||||||| ||||| | |||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

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Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 9565826 - 9565879
Alignment:
Q  69 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||||||||||| |||| || ||| || || ||||||||||||||||    
T  9565826 tgtacaatttagtccaagactcttgatctccgtactccttcataatccaaacat 9565879  T

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Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 23230982 - 23231031
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaaca 121  Q
    |||||||| ||||||| |||| |||||||||||||||||| | |||||||    
T  23230982 acaatttaatccaagactcttcatttccatattctttcattagccaaaca 23231031  T

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Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 968720 - 968672
Alignment:
Q  74 aatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||| || ||||||||||||| ||| ||||||| ||||||||    
T  968720 aatttagtccatgactctttatttccatgttccttcataacccaaacat 968672  T

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Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 2456141 - 2456101
Alignment:
Q  220 ttgatatgactcattttccaaatcaagagaaacaatgaaaa 260  Q
    |||||||||||| || |||||||||||||||||||| ||||    
T  2456141 ttgatatgactccttctccaaatcaagagaaacaataaaaa 2456101  T

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Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 2635777 - 2635710
Alignment:
Q  67 actgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcac 137  Q
    ||||||||||||||||||||| |||| | ||||||| ||   ||||||||||||||  |||||||| ||||    
T  2635777 actgtacaatttagtccaagactcttcacttccatactc---cataatccaaacatccaaaaacacatcac 2635710  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 51381446 - 51381502
Alignment:
Q  63 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaa 119  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||    
T  51381446 gaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaa 51381502  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 51854998 - 51854948
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||    
T  51854998 acaatttagtccaagattctacatttccatattctttcatgatccaaacat 51854948  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 51832424 - 51832377
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaa 119  Q
    |||||||||||||||||| || |||||||||||||||||| |||||||    
T  51832424 acaatttagtccaagattgttcatttccatattctttcattatccaaa 51832377  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 51858657 - 51858607
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||||||||||||||||  |||||||||||| ||||| ||||||||||    
T  51858657 acaatttagtccaagattctacatttccatattccttcatgatccaaacat 51858607  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 51782848 - 51782800
Alignment:
Q  74 aatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||| ||||||||| || |||||||||||| ||||||||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacat 51782800  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 51756750 - 51756800
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||||||||||||||| |  |||||||||||| ||||| ||||||||||    
T  51756750 acaatttagtccaagattgtccatttccatattccttcatgatccaaacat 51756800  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 24246506 - 24246547
Alignment:
Q  81 tccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||    
T  24246506 tccaagactctttatttccgtattctttcataagccaaacat 24246547  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 24513106 - 24513057
Alignment:
Q  73 caatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||| |||| || |||||| |||||||||||||||||| ||||||||    
T  24513106 caatttaatccatgactctttacttccatattctttcataagccaaacat 24513057  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 25478915 - 25478866
Alignment:
Q  73 caatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||| |||||||||||||||| || ||||| ||||||| ||||||||    
T  25478915 caatttaatccaagattctttattaccgtattccttcataagccaaacat 25478866  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 51829827 - 51829778
Alignment:
Q  73 caatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||| |||||||||  | |||||||||||||||||| ||||||||||    
T  51829827 caatttaatccaagattggtcatttccatattctttcattatccaaacat 51829778  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 23896147 - 23896187
Alignment:
Q  82 ccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||| ||||||||||||||||| ||||||| ||||||||    
T  23896147 ccaagactctttatttccatattccttcataagccaaacat 23896187  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 24629213 - 24629261
Alignment:
Q  74 aatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    |||||| ||||||| ||||||||||| ||||| ||||||| ||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacat 24629261  T

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Target: scaffold0044 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 89197 - 89147
Alignment:
Q  69 tgtacaatttagtccaagattctttatttccatattctttcataatccaaa 119  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  89197 tgtacaatttagtccaagactctttatttccatattccttcataacccaaa 89147  T

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Target: scaffold1004 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 268
Target Start/End: Complemental strand, 2191 - 1998
Alignment:
Q  75 atttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaaccca 174  Q
    ||||||||||||| |||  |||||||||||| ||||||  ||||||||| |||||||| |||    ||| || ||||||||| |||||| | |||||||     
T  2191 atttagtccaagactctacatttccatattccttcatagcccaaacattcaaaaacacatcattacttgcaaagatgcacaagcaatcctttaaaacccc 2092  T
Q  175 caaacttgtgaaacaatcatcctccatattaggcagcggaagccgttgatatgactcattttccaaatcaagagaaacaatgaaaaacgaagaa 268  Q
    |||| | ||  ||  |||   ||||||||||||  ||  ||||  |||||||||||| ||   |||||||||||||||||||| | ||||||||    
T  2091 caaagtcgtccaatgatccatctccatattaggtggcaaaagcttttgatatgactctttcgtcaaatcaagagaaacaatgacacacgaagaa 1998  T

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Target: scaffold0760 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 268
Target Start/End: Complemental strand, 4686 - 4493
Alignment:
Q  75 atttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaaccca 174  Q
    ||||||||||||| |||  |||||||||||| ||||||  ||||||||| |||||||| |||    ||| || ||||||||| |||||| | |||||||     
T  4686 atttagtccaagactctacatttccatattccttcatagcccaaacattcaaaaacacatcattacttgcaaagatgcacaagcaatcctttaaaacccc 4587  T
Q  175 caaacttgtgaaacaatcatcctccatattaggcagcggaagccgttgatatgactcattttccaaatcaagagaaacaatgaaaaacgaagaa 268  Q
    |||| | ||  ||  |||   ||||||||||||  ||  ||||  |||||||||||| ||   |||||||||||||||||||| | ||||||||    
T  4586 caaagtcgtccaatgatccatctccatattaggtggcaaaagcttttgatatgactctttcgtcaaatcaagagaaacaatgacacacgaagaa 4493  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 32330 - 32379
Alignment:
Q  73 caatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataagccaaacat 32379  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 22672127 - 22672175
Alignment:
Q  72 acaatttagtccaagattctttatttccatattctttcataatccaaac 120  Q
    ||||||||||||||||||| |||||||||||||| ||||| | ||||||    
T  22672127 acaatttagtccaagattccttatttccatattccttcattacccaaac 22672175  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 1421170 - 1421219
Alignment:
Q  73 caatttagtccaagattctttatttccatattctttcataatccaaacat 122  Q
    ||||||| ||||||| ||||||||||| ||||| ||||||| ||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcataagccaaacat 1421219  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 39299033 - 39298969
Alignment:
Q  67 actgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 131  Q
    |||||| ||||||||||| || |||||||||||| |||| |||| || ||||||||  |||||||    
T  39299033 actgtaaaatttagtccaggactctttatttccacattccttcaaaacccaaacatcaaaaaaca 39298969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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