View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17027_high_12 (Length: 327)
Name: NF17027_high_12
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 4243600 - 4243892
Alignment:
| Q |
18 |
aactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgattgaggat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243600 |
aactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgattgaggat |
4243699 |
T |
|
| Q |
118 |
gtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcataccaaccgatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243700 |
gtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcataccaaccgatg |
4243799 |
T |
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| Q |
218 |
taacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacatgatcgctctcac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243800 |
taacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacatgatcgctctcac |
4243892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 6186656 - 6186948
Alignment:
| Q |
18 |
aactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgattgaggat |
117 |
Q |
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||||||| |||||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| |||||||||| |||||||| || ||| |
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| T |
6186656 |
aactccggcatcagtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaaccaacttttccgatcgatgat |
6186755 |
T |
|
| Q |
118 |
gtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcataccaaccgatg |
217 |
Q |
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|| || ||||||||||||||||||||||| ||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6186756 |
gttagcttattcaaccttgtttgcaaaggtgtttcctcatcgatgtcattgcttatcgaactcatcatttgtccccatgttgtgttcataccgaccgatg |
6186855 |
T |
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| Q |
218 |
taacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacatgatcgctctcac |
310 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
6186856 |
taacaagcatttttgcatatccatcgacaacttttgtcccggaaagcaaaaaaggatgaaaattttgatttatctctacatgatcactctcac |
6186948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 38358431 - 38358526
Alignment:
| Q |
178 |
ctcatcatttgtccccatgttgtgttcataccaaccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaagga |
273 |
Q |
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||||||||||||||||||| |||||| | || || ||||| || ||||| | ||||||||||| |||||||||| ||||| | |||||||||| |
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| T |
38358431 |
ctcatcatttgtccccatgatgtgtttttgcccacagatgttacaagcatctgagcatatccatccacaacttttgcgccggacaacaaaaaagga |
38358526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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