View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17027_high_13 (Length: 325)

Name: NF17027_high_13
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17027_high_13
NF17027_high_13
[»] chr8 (1 HSPs)
chr8 (1-293)||(41021955-41022247)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 41022247 - 41021955
Alignment:
Q  1 atcaccaataacattacaacagcttgttgaaagggacttggccagacgcgaatcatggatgaatatccataatgatgcagaagaaattgcaatggaggtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41022247 atcaccaataacattacaacagcttgttgaaagggacttggccagacgcgaatcatggatgaatatccataatgatgcagaagaaattgcaatggaggtg 41022148  T
Q  101 gagaaaaatgttttggaaacactggttttggaaatcgtgtctgagatgaatatatcatagaagtgatacattgcattgaacttaggttccatggaagata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41022147 gagaaaaatgttttggaaacactggttttggaaatcgtgtctgagatgaatatatcatagaagtgatacattgcattgaacttaggttccatggaagata 41022048  T
Q  201 gaaatagaatgtcttgttttatttctagctacatttaacattcatctcactatcacttagaaacaattgttcattttacaaactatttaaaat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41022047 gaaatagaatgtcttgttttatttctagctacatttaacattcatctcactatcacttagaaacaattgttcattttacaaactatttaaaat 41021955  T

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