View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17027_high_14 (Length: 318)
Name: NF17027_high_14
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 4243869 - 4244176
Alignment:
| Q |
1 |
taatctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243869 |
taatctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaat |
4243968 |
T |
|
| Q |
101 |
cttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243969 |
cttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttga |
4244068 |
T |
|
| Q |
201 |
gacaatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcataccaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4244069 |
gacaatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctgccaccatcataccaac |
4244168 |
T |
|
| Q |
301 |
ctcctttg |
308 |
Q |
| |
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|| ||||| |
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| T |
4244169 |
cttctttg |
4244176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 6186927 - 6187232
Alignment:
| Q |
3 |
atctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatct |
102 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
6186927 |
atctctacatgatcactctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatct |
6187026 |
T |
|
| Q |
103 |
tcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgaga |
202 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||| | | || ||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
6187027 |
tcaaacaaacaacatcaccaacaacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgaga |
6187126 |
T |
|
| Q |
203 |
caatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcataccaacct |
302 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6187127 |
caatttatcaaattgtttgttttgtttgaagttgcttattgatgacatcgaaataacgatgaaaacagctaggaaaatgctaccaccatcataccaacct |
6187226 |
T |
|
| Q |
303 |
cctttg |
308 |
Q |
| |
|
||||| |
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|
| T |
6187227 |
tctttg |
6187232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 6169979 - 6170129
Alignment:
| Q |
1 |
taatctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaat |
100 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||| |||||||||||||||| |||| |||||| | ||| ||||||| ||||||||||||||| |
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| T |
6169979 |
taatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataatccatttatcaatacttgatcaccaat |
6170078 |
T |
|
| Q |
101 |
cttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttg |
151 |
Q |
| |
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|||||| |||||||||||||||||||||| || || || |||| |||||| |
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| T |
6170079 |
attcaaaaaaacaacatcaccaacaacaatctcaaagatcgatatcttttg |
6170129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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