View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17027_high_5 (Length: 565)

Name: NF17027_high_5
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17027_high_5
NF17027_high_5
[»] chr7 (11 HSPs)
chr7 (19-435)||(5268356-5268772)
chr7 (308-435)||(6944694-6944821)
chr7 (443-559)||(5267576-5267691)
chr7 (308-408)||(48942841-48942941)
chr7 (398-431)||(3223647-3223680)
chr7 (398-431)||(12173168-12173201)
chr7 (398-431)||(21908131-21908164)
chr7 (388-428)||(41932601-41932641)
chr7 (388-435)||(30129172-30129219)
chr7 (398-427)||(21981970-21981999)
chr7 (398-431)||(29104981-29105014)
[»] chr4 (7 HSPs)
chr4 (308-435)||(18302269-18302396)
chr4 (465-514)||(12224467-12224516)
chr4 (398-431)||(29323157-29323190)
chr4 (388-435)||(48851441-48851488)
chr4 (398-429)||(49626349-49626380)
chr4 (398-431)||(31068161-31068194)
chr4 (403-435)||(18032080-18032112)
[»] chr3 (5 HSPs)
chr3 (308-435)||(13234435-13234562)
chr3 (319-435)||(35097290-35097406)
chr3 (398-431)||(20551410-20551443)
chr3 (398-431)||(51830954-51830987)
chr3 (382-431)||(10266089-10266138)
[»] chr8 (5 HSPs)
chr8 (339-435)||(8768602-8768698)
chr8 (398-431)||(19392129-19392162)
chr8 (398-431)||(35467017-35467050)
chr8 (316-353)||(37241890-37241927)
chr8 (398-431)||(12318111-12318144)
[»] chr2 (7 HSPs)
chr2 (320-435)||(44511568-44511683)
chr2 (398-431)||(14709741-14709774)
chr2 (398-431)||(39164443-39164476)
chr2 (466-514)||(13475954-13476002)
chr2 (401-431)||(5156763-5156793)
chr2 (398-431)||(20912616-20912649)
chr2 (403-435)||(37874715-37874747)
[»] chr6 (5 HSPs)
chr6 (316-424)||(14174511-14174620)
chr6 (316-424)||(14179047-14179156)
chr6 (308-394)||(30863779-30863865)
chr6 (398-431)||(10130315-10130348)
chr6 (398-431)||(26241830-26241863)
[»] chr1 (6 HSPs)
chr1 (388-435)||(20015309-20015356)
chr1 (319-357)||(10986650-10986688)
chr1 (398-431)||(15232198-15232231)
chr1 (398-431)||(16291324-16291357)
chr1 (398-431)||(17202306-17202339)
chr1 (398-431)||(8263472-8263505)
[»] chr5 (5 HSPs)
chr5 (398-431)||(26720022-26720055)
chr5 (398-431)||(26989768-26989801)
chr5 (449-513)||(5465398-5465463)
chr5 (402-431)||(27426612-27426641)
chr5 (465-513)||(10273268-10273316)
[»] scaffold0017 (1 HSPs)
scaffold0017 (398-427)||(188898-188927)


Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 5268772 - 5268356
Alignment:
Q  19 agtgtcagtcatgatcctgctgtatctgcaatgtttctaaaacacaaacatataataagattgctattgcaagtaggaagagcaatctataacctaagat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5268772 agtgtcagtcatgatcctgctgtatctgcaatgtttctaaaacacaaacatataataagattgctattgcaagtaggaagaacaatctataacctaagat 5268673  T
Q  119 aaaacattactcatcagtcatgtgttatctcctacttatgttatcaagacattttctttccccttttgaactatttgcctcaaatttcatacatgtacac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5268672 aaaacattactcatcagtcatgtgttatctcctacttatgttatcaagacattttctttccccttttgaactatttgcctcaaatttcatacatgtacac 5268573  T
Q  219 ttttgttcaaaacttaaggctaagcttagctaataaatgtgacattttccaaggtcccttcttagtaatttgaagggtgaaagtaaacgatcacttcggc 318  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5268572 ttttgttcaaaacttaaggctaagcttagctaataaatgtgagattttccaaggtcccttctttgtaatttgaagggtgaaagtaaacgatcacttcggc 5268473  T
Q  319 taatgattctaacaaaaatccatttttgggctataataagaatttttattctcaaataatatcagagggttttgccatcgtcgtggaaattccatttttc 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5268472 taatgattctaacaaaaatccatttttgggctataataagaatttttattctcaaataatatcagagggttttgccatcgtcatggaaattccatttttc 5268373  T
Q  419 ctagaattaagctcttc 435  Q
    |||||||||||||||||    
T  5268372 ctagaattaagctcttc 5268356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 308 - 435
Target Start/End: Complemental strand, 6944821 - 6944694
Alignment:
Q  308 atcacttcggctaatgattctaacaaaaatccatttttgggctataataagaatttttattctcaaataatatcagagggttttgccatcgtcgtggaaa 407  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||    
T  6944821 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtgggggaaa 6944722  T
Q  408 ttccatttttcctagaattaagctcttc 435  Q
    ||||||||||||||||||||||||||||    
T  6944721 ttccatttttcctagaattaagctcttc 6944694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 443 - 559
Target Start/End: Complemental strand, 5267691 - 5267576
Alignment:
Q  443 aatttgcatccaaacgtaaatcttttacattcaattaacttataactaaaataaattttacaaaatcaattccagaatgaacaaagctagagtgaacaca 542  Q
    |||||| |||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  5267691 aatttgtatccaaacataaatcttttacgttcaattaacttataactaaaatcaattttacaaaatcaattccagaatgaacaaagc-agagtgaacaca 5267593  T
Q  543 agttccagaataatcta 559  Q
    ||||||||||| |||||    
T  5267592 agttccagaatgatcta 5267576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 308 - 408
Target Start/End: Original strand, 48942841 - 48942941
Alignment:
Q  308 atcacttcggctaatgattctaacaaaaatccatttttgggctataataagaatttttattctcaaataatatcagagggttttgccatcgtcgtggaaa 407  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48942841 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtggtggaaa 48942940  T
Q  408 t 408  Q
    |    
T  48942941 t 48942941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 3223647 - 3223680
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  3223647 gtcgtggaaattccatttttcctagaattaagct 3223680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 12173201 - 12173168
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  12173201 gtcgtggaaattccatttttcctagaattaagct 12173168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 21908131 - 21908164
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  21908131 gtcgtggaaattccatttttcctagaattaagct 21908164  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 41932641 - 41932601
Alignment:
Q  388 ttttgccatcgtcgtggaaattccatttttcctagaattaa 428  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  41932641 ttttgccatcattgtggaaattccatttttcctagaattaa 41932601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 435
Target Start/End: Complemental strand, 30129219 - 30129172
Alignment:
Q  388 ttttgccatcgtcgtggaaattccatttttcctagaattaagctcttc 435  Q
    |||||||||| || ||||||||| |||||||||||||||||| |||||    
T  30129219 ttttgccatcatcatggaaattcaatttttcctagaattaagatcttc 30129172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 21981970 - 21981999
Alignment:
Q  398 gtcgtggaaattccatttttcctagaatta 427  Q
    ||||||||||||||||||||||||||||||    
T  21981970 gtcgtggaaattccatttttcctagaatta 21981999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 29104981 - 29105014
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    |||||||||||| |||||||||||||||||||||    
T  29104981 gtcgtggaaatttcatttttcctagaattaagct 29105014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 308 - 435
Target Start/End: Original strand, 18302269 - 18302396
Alignment:
Q  308 atcacttcggctaatgattctaacaaaaatccatttttgggctataataagaatttttattctcaaataatatcagagggttttgccatcgtcgtggaaa 407  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18302269 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtggtggaaa 18302368  T
Q  408 ttccatttttcctagaattaagctcttc 435  Q
    ||||||||||||||||||||||||||||    
T  18302369 ttccatttttcctagaattaagctcttc 18302396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 514
Target Start/End: Original strand, 12224467 - 12224516
Alignment:
Q  465 ttttacattcaattaacttataactaaaataaattttacaaaatcaattc 514  Q
    |||| ||||||| | |||| ||||||||||||||||||||||||||||||    
T  12224467 ttttgcattcaacttacttttaactaaaataaattttacaaaatcaattc 12224516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 29323190 - 29323157
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  29323190 gtcgtggaaattccatttttcctagaattaagct 29323157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 435
Target Start/End: Complemental strand, 48851488 - 48851441
Alignment:
Q  388 ttttgccatcgtcgtggaaattccatttttcctagaattaagctcttc 435  Q
    |||| ||||| ||||| ||||| |||||||||||||||||||||||||    
T  48851488 tttttccatcatcgtgaaaatttcatttttcctagaattaagctcttc 48851441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 429
Target Start/End: Complemental strand, 49626380 - 49626349
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaag 429  Q
    ||||||||||||||||||||||||||||||||    
T  49626380 gtcgtggaaattccatttttcctagaattaag 49626349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 31068194 - 31068161
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    |||||||||||| |||||||||||||||||||||    
T  31068194 gtcgtggaaatttcatttttcctagaattaagct 31068161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 18032080 - 18032112
Alignment:
Q  403 ggaaattccatttttcctagaattaagctcttc 435  Q
    ||||||||||||||| |||||||||||||||||    
T  18032080 ggaaattccattttttctagaattaagctcttc 18032112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 308 - 435
Target Start/End: Original strand, 13234435 - 13234562
Alignment:
Q  308 atcacttcggctaatgattctaacaaaaatccatttttgggctataataagaatttttattctcaaataatatcagagggttttgccatcgtcgtggaaa 407  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13234435 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtggtggaaa 13234534  T
Q  408 ttccatttttcctagaattaagctcttc 435  Q
    ||||||||||||||||||||||||||||    
T  13234535 ttccatttttcctagaattaagctcttc 13234562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 319 - 435
Target Start/End: Original strand, 35097290 - 35097406
Alignment:
Q  319 taatgattctaacaaaaatccatttttgggctataataagaatttttattctcaaataatatcagagggttttgccatcgtcgtggaaattccatttttc 418  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||     
T  35097290 taatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagtattttgccatcatcgtggaaattccatttttt 35097389  T
Q  419 ctagaattaagctcttc 435  Q
    |||||||||||||||||    
T  35097390 ctagaattaagctcttc 35097406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 20551443 - 20551410
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  20551443 gtcgtggaaattccatttttcctagaattaagct 20551410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 51830954 - 51830987
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  51830954 gtcgtggaaattccatttttcctagaattaagct 51830987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Original strand, 10266089 - 10266138
Alignment:
Q  382 agagggttttgccatcgtcgtggaaattccatttttcctagaattaagct 431  Q
    |||||||||||  |  ||||||||||||||| ||||||||||||||||||    
T  10266089 agagggttttgaaaaagtcgtggaaattccaattttcctagaattaagct 10266138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 339 - 435
Target Start/End: Complemental strand, 8768698 - 8768602
Alignment:
Q  339 catttttgggctataataagaatttttattctcaaataatatcagagggttttgccatcgtcgtggaaattccatttttcctagaattaagctcttc 435  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  8768698 cattttggggctataataagaatttttattctcaaataatatcaaagggttttgccatcgtggtggaaattccattttttctagaattaagctcttc 8768602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 19392129 - 19392162
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  19392129 gtcgtggaaattccatttttcctagaattaagct 19392162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 35467050 - 35467017
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  35467050 gtcgtggaaattccatttttcctagaattaagct 35467017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 37241927 - 37241890
Alignment:
Q  316 ggctaatgattctaacaaaaatccatttttgggctata 353  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  37241927 ggctaatgattctaacaaaaatccattttggggctata 37241890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 12318111 - 12318144
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    |||||||||||| |||||||||||||||||||||    
T  12318111 gtcgtggaaatttcatttttcctagaattaagct 12318144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 320 - 435
Target Start/End: Original strand, 44511568 - 44511683
Alignment:
Q  320 aatgattctaacaaaaatccatttttgggctataataagaatttttattctcaaataatatcagagggttttgccatcgtcgtggaaattccatttttcc 419  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||||||||||| |||||| |||| ||||||||||| ||||||| |    
T  44511568 aatgattctaacaaaaatccattttgaggctataataagaatttttgtcctcaaataatatcagagagttttgtcatcatcgtggaaatttcattttttc 44511667  T
Q  420 tagaattaagctcttc 435  Q
    ||||||||||||||||    
T  44511668 tagaattaagctcttc 44511683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 14709741 - 14709774
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  14709741 gtcgtggaaattccatttttcctagaattaagct 14709774  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 39164476 - 39164443
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  39164476 gtcgtggaaattccatttttcctagaattaagct 39164443  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 13475954 - 13476002
Alignment:
Q  466 tttacattcaattaacttataactaaaataaattttacaaaatcaattc 514  Q
    ||||||||||||| |||||||| |||||| ||||| |||||||||||||    
T  13475954 tttacattcaattcacttataagtaaaatcaatttaacaaaatcaattc 13476002  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 431
Target Start/End: Complemental strand, 5156793 - 5156763
Alignment:
Q  401 gtggaaattccatttttcctagaattaagct 431  Q
    |||||||||||||||||||||||||||||||    
T  5156793 gtggaaattccatttttcctagaattaagct 5156763  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 20912649 - 20912616
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    |||||||||||| |||||||||||||||||||||    
T  20912649 gtcgtggaaatttcatttttcctagaattaagct 20912616  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 37874715 - 37874747
Alignment:
Q  403 ggaaattccatttttcctagaattaagctcttc 435  Q
    ||||||||||||||| |||||||||||||||||    
T  37874715 ggaaattccattttttctagaattaagctcttc 37874747  T

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Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 316 - 424
Target Start/End: Complemental strand, 14174620 - 14174511
Alignment:
Q  316 ggctaatgattctaacaaaaatccatttttgggctataataagaattttt-attctcaaataatatcagagggttttgccatcgtcgtggaaattccatt 414  Q
    ||||||||||||||||||||||  ||||| |||||| ||||||||||||| ||||||||||||||| |||| ||||| | ||||||||||||||||||||    
T  14174620 ggctaatgattctaacaaaaatatattttggggctagaataagaattttttattctcaaataatattagagtgtttttctatcgtcgtggaaattccatt 14174521  T
Q  415 tttcctagaa 424  Q
    ||||||||||    
T  14174520 tttcctagaa 14174511  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 316 - 424
Target Start/End: Complemental strand, 14179156 - 14179047
Alignment:
Q  316 ggctaatgattctaacaaaaatccatttttgggctataataagaattttt-attctcaaataatatcagagggttttgccatcgtcgtggaaattccatt 414  Q
    ||||||||||||||||||||||  ||||| |||||| ||||||||||||| ||||||||||||||| |||| ||||| | ||||||||||||||||||||    
T  14179156 ggctaatgattctaacaaaaatatattttggggctagaataagaattttttattctcaaataatattagagtgtttttctatcgtcgtggaaattccatt 14179057  T
Q  415 tttcctagaa 424  Q
    ||||||||||    
T  14179056 tttcctagaa 14179047  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 394
Target Start/End: Complemental strand, 30863865 - 30863779
Alignment:
Q  308 atcacttcggctaatgattctaacaaaaatccatttttgggctataataagaatttttattctcaaataatatcagagggttttgcc 394  Q
    |||| |||||||| |||||| ||| ||| | |||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||    
T  30863865 atcatttcggctattgattcaaacgaaagttcatttttggggtataataagattttttactctcaaataatatcagagggtattgcc 30863779  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 10130315 - 10130348
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  10130315 gtcgtggaaattccatttttcctagaattaagct 10130348  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 26241830 - 26241863
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    |||||||||||| |||||||||||||||||||||    
T  26241830 gtcgtggaaatttcatttttcctagaattaagct 26241863  T

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Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 388 - 435
Target Start/End: Complemental strand, 20015356 - 20015309
Alignment:
Q  388 ttttgccatcgtcgtggaaattccatttttcctagaattaagctcttc 435  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  20015356 ttttgccatcatcgtggaaattccatttttcctagaattaagctcttc 20015309  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 10986688 - 10986650
Alignment:
Q  319 taatgattctaacaaaaatccatttttgggctataataa 357  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  10986688 taatgattctaacaaaaatccattttggggctataataa 10986650  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 15232198 - 15232231
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  15232198 gtcgtggaaattccatttttcctagaattaagct 15232231  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 16291357 - 16291324
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  16291357 gtcgtggaaattccatttttcctagaattaagct 16291324  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 17202339 - 17202306
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  17202339 gtcgtggaaattccatttttcctagaattaagct 17202306  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 8263505 - 8263472
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    |||||||||||| |||||||||||||||||||||    
T  8263505 gtcgtggaaatttcatttttcctagaattaagct 8263472  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 26720055 - 26720022
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  26720055 gtcgtggaaattccatttttcctagaattaagct 26720022  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 26989801 - 26989768
Alignment:
Q  398 gtcgtggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||||||    
T  26989801 gtcgtggaaattccatttttcctagaattaagct 26989768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 5465463 - 5465398
Alignment:
Q  449 catccaaacgtaaatc-ttttacattcaattaacttataactaaaataaattttacaaaatcaatt 513  Q
    |||| |||| |||||| |||| ||||||||| |||| || ||||||| ||||||||||||||||||    
T  5465463 catctaaacataaatcatttttcattcaattcacttttatctaaaatcaattttacaaaatcaatt 5465398  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Original strand, 27426612 - 27426641
Alignment:
Q  402 tggaaattccatttttcctagaattaagct 431  Q
    ||||||||||||||||||||||||||||||    
T  27426612 tggaaattccatttttcctagaattaagct 27426641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 513
Target Start/End: Complemental strand, 10273316 - 10273268
Alignment:
Q  465 ttttacattcaattaacttataactaaaataaattttacaaaatcaatt 513  Q
    ||||| |||||| | |||||||| |||||| ||||||||||||||||||    
T  10273316 ttttatattcaactcacttataagtaaaattaattttacaaaatcaatt 10273268  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 188898 - 188927
Alignment:
Q  398 gtcgtggaaattccatttttcctagaatta 427  Q
    ||||||||||||||||||||||||||||||    
T  188898 gtcgtggaaattccatttttcctagaatta 188927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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