View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17027_high_7 (Length: 426)
Name: NF17027_high_7
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 410
Target Start/End: Complemental strand, 25493023 - 25492629
Alignment:
| Q |
14 |
aaaataagagggttctactaggtttagaaacttcttagatctgaaattataatatgatggccaaacatttctaaacataagtccatgttcattacattag |
113 |
Q |
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|||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| | |||||||| |||||| |||||||||||||||||| ||| |
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| T |
25493023 |
aaaataggagggttctactgggtttagaaacttcttaggtctgaaattataatatgatagacaaacattgctaaacgcaagtccatgttcattacactag |
25492924 |
T |
|
| Q |
114 |
attcatatacatattaccgattctcaaactgcaagcattagcaatcttaagtttaagcatcgttgaaaagtatcatgctccaagatcatatgccttctat |
213 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
25492923 |
attcattaacatattactgattctcaaactgcaagcattagaaatcttaagtttaagcatcatcgaaaagtatcatgctccaagatcatatgccttctat |
25492824 |
T |
|
| Q |
214 |
taaggagttctctcttttaaacttctttgggtgacttgtcatttgtgtgcagctcccattattattaaggttgcctagcattcccaatggtaccgtttgg |
313 |
Q |
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| T |
25492823 |
tgaggagttttctcttttaaacttctttgcctgacttgtcatttgcgtgcagctccctttattattcaggtttcctagtattcccattcctatggttggg |
25492724 |
T |
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| Q |
314 |
taaaaattaacgccgatggtgttgtgaaaggatcccctggccaatcaggagatggtgctacttttagagatagtagtaaagttgttatgggctgttt |
410 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
25492723 |
taaaaattaacagtgatg--gttgtgaaaggatcccctggccaatcaggagatggtgctatttttagagatagtagtaaagttattatgggctgttt |
25492629 |
T |
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